GreenleafLab / MPAL-Single-Cell-2019Links
Publication Page for MPAL Paper 2019
☆83Updated 5 years ago
Alternatives and similar repositories for MPAL-Single-Cell-2019
Users that are interested in MPAL-Single-Cell-2019 are comparing it to the libraries listed below
Sorting:
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆78Updated 9 months ago
- ☆125Updated 3 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- ☆62Updated 6 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- Functional Inference of Gene Regulation☆48Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- ☆58Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated last month
- Metacell - Single-cell mRNA Analysis☆117Updated 9 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆111Updated 2 years ago
- ☆47Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A package for automated processing of single cell RNA-seq data in cancer☆113Updated last month
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆129Updated 3 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆171Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- ☆63Updated 5 years ago