GreenleafLab / MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
☆82Updated 4 years ago
Alternatives and similar repositories for MPAL-Single-Cell-2019:
Users that are interested in MPAL-Single-Cell-2019 are comparing it to the libraries listed below
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 4 years ago
- ☆59Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆66Updated last week
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 9 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆94Updated last year
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- R package for semi-supervised single-cell data integration☆81Updated 3 weeks ago
- ☆46Updated 2 years ago
- Functional Inference of Gene Regulation☆42Updated 9 months ago
- Methods to discover gene programs on single-cell data☆109Updated last month
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- R package for pathway analysis in scRNA-seq data☆72Updated 8 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆104Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆107Updated 2 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 2 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 7 months ago
- ☆60Updated 4 years ago
- ☆35Updated 7 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆99Updated last year
- ☆50Updated 7 months ago
- ☆49Updated 6 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago
- Tools for single-cell data processing☆123Updated 10 months ago
- Tools used in Human Cell Landscape(HCL)☆54Updated 4 years ago