ebi-gene-expression-group / r-seurat-scriptsLinks
Scripts to install as a Bioconda package for making workflows
☆18Updated 10 months ago
Alternatives and similar repositories for r-seurat-scripts
Users that are interested in r-seurat-scripts are comparing it to the libraries listed below
Sorting:
- An R package to analyze single-cell V(D)J data☆28Updated last year
- ☆28Updated last year
- Peak caller for CUT&TAG data☆28Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Docker container for genomics analyses in R.☆25Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated 3 months ago
- A single cell sequencing read simulator.☆33Updated 9 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated 3 months ago
- binned motif enrichment analysis and visualisation☆41Updated last week
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- scover☆23Updated last year
- workshop website on readthedocs☆19Updated 3 weeks ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Single-cell RNA Processing Software☆11Updated last month
- R package for Flexible dot plots☆29Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A snakemake pipeline for 10X genomics cellranger☆21Updated 7 months ago