ebi-gene-expression-group / r-seurat-scripts
Scripts to install as a Bioconda package for making workflows
☆18Updated 7 months ago
Alternatives and similar repositories for r-seurat-scripts:
Users that are interested in r-seurat-scripts are comparing it to the libraries listed below
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- An R package to analyze single-cell V(D)J data☆25Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Snakemake pipeline for running MAJIQ☆22Updated last year
- ☆29Updated 2 years ago
- ☆27Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- workshop website on readthedocs☆19Updated last week
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 11 months ago
- binned motif enrichment analysis and visualisation☆40Updated this week
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆49Updated 9 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- scover☆23Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆32Updated 3 years ago
- Single-cell RNA Processing Software☆11Updated 6 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago