ebi-gene-expression-group / r-seurat-scriptsLinks
Scripts to install as a Bioconda package for making workflows
☆17Updated last year
Alternatives and similar repositories for r-seurat-scripts
Users that are interested in r-seurat-scripts are comparing it to the libraries listed below
Sorting:
- ☆28Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Docker container for genomics analyses in R.☆25Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- ☆39Updated 3 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- workshop website on readthedocs☆19Updated 2 weeks ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- A single cell sequencing read simulator.☆33Updated 11 months ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated this week
- Tools for assessing clustering robustness☆25Updated last week
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- binned motif enrichment analysis and visualisation☆41Updated last week
- ☆23Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- scover☆23Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆29Updated 2 years ago