ebi-gene-expression-group / r-seurat-scriptsLinks
Scripts to install as a Bioconda package for making workflows
☆18Updated 10 months ago
Alternatives and similar repositories for r-seurat-scripts
Users that are interested in r-seurat-scripts are comparing it to the libraries listed below
Sorting:
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Docker container for genomics analyses in R.☆25Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- ☆28Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- binned motif enrichment analysis and visualisation☆40Updated 2 weeks ago
- ☆22Updated last year
- workshop website on readthedocs☆19Updated this week
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Lightweight Iterative Gene set Enrichment in R☆57Updated 9 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- ☆38Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- processes GoT amplicon data and generates a table of metrics☆30Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Peak caller for CUT&TAG data☆28Updated 2 years ago
- Create QC and summary reports for Alevin output☆32Updated 3 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Single-cell RNA Processing Software☆11Updated 3 weeks ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- Batch Correction and Adaptive Contrast Calling in Complex RNA-seq Experimental Designs Using DESeq2☆16Updated 2 months ago