bvieth / powsimR
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
☆106Updated last year
Alternatives and similar repositories for powsimR:
Users that are interested in powsimR are comparing it to the libraries listed below
- Clone of the Bioconductor repository for the scater package.☆95Updated this week
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆70Updated this week
- An R interface to enrichR☆90Updated last month
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆162Updated 3 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆103Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆120Updated last week
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 3 months ago
- Identify and correct invalid gene symbols☆59Updated 3 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 5 months ago
- ☆53Updated 3 weeks ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Toolbox with R scripts☆38Updated 6 years ago
- R package for genomic feature analysis and visualization☆75Updated 5 years ago
- R data package for annotating/converting Gene IDs☆163Updated 2 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆83Updated 9 months ago
- Transcript quantification import for modular pipelines☆137Updated 11 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆91Updated 5 months ago
- ☆53Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated 2 months ago
- Simplify functional enrichment results☆113Updated 5 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆146Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆57Updated last year
- Integrative pathway enrichment analysis of multivariate omics data☆107Updated 7 months ago
- Content for the OSCA Book.☆66Updated last year
- ☆83Updated 3 years ago