bvieth / powsimRLinks
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
☆106Updated 2 years ago
Alternatives and similar repositories for powsimR
Users that are interested in powsimR are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the scater package.☆97Updated 6 months ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- An R interface to enrichR☆92Updated 7 months ago
- Toolbox with R scripts☆38Updated 6 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆74Updated 2 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Devel repository for minfi☆61Updated last year
- Content for the OSCA Book.☆66Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆43Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆66Updated last month
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…☆154Updated 3 weeks ago
- R data package for annotating/converting Gene IDs☆167Updated 2 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 5 months ago
- R package of colors for the Buenrostro Lab☆84Updated last year
- Toolkit for Single-Cell Velocity☆59Updated 2 months ago
- ☆10Updated 7 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 9 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆105Updated 2 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- ☆55Updated 7 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆96Updated 11 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Batch effects and the effective design of single-cell gene expression studies☆103Updated 6 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated last month
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆84Updated this week
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆77Updated 6 months ago