Alternatives and similar repositories for tidyomicsBlog_ARCHIVE

Users that are interested in tidyomicsBlog_ARCHIVE are comparing it to the libraries listed below

• malhamdoosh / EGSEA
  This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
  ☆10Updated last year
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated last month
• csoneson / ExploreModelMatrix
  Explore design matrices interactively with R/Shiny
  ☆37Updated 2 weeks ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated last month
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• stemangiola / bioc_2020_tidytranscriptomics
  Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
  ☆26Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• tidyomics / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆26Updated this week
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆23Updated 3 weeks ago
• federicomarini / ideal
  Interactive Differential Expression AnaLysis - DE made accessible and reproducible
  ☆31Updated 5 months ago
• waldronlab / enrichOmics
  Functional enrichment analysis of high-throughput omics data
  ☆20Updated 9 months ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆40Updated last year
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• carpentries-incubator / bioc-project
  Introduction to the Bioconductor project
  ☆18Updated last week
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 4 months ago
• Bioconductor / BioC2020
  BioC2020: Where Software and Biology Connect
  ☆12Updated 2 years ago
• MonashBioinformaticsPlatform / varistran
  R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data
  ☆21Updated 5 months ago
• omicsCore / SEQprocess
  SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
  ☆17Updated 5 years ago
• StoreyLab / superSeq
  Assessing the increase in power from increasing read depth in a given RNA-Seq study
  ☆13Updated 6 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 2 months ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated 6 months ago
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 3 months ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated 3 months ago
• aedin / PCAworkshop
  An introduction to matrix factorization and PCA and SVD.
  ☆41Updated 2 years ago
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆25Updated this week
• Bioconductor / SummarizedExperiment
  A container (S4 class) for matrix-like assays
  ☆36Updated last month
• cBioPortal / 2020-cbioportal-r-workshop
  Workshop materials for cBioPortal Webinar 5: API & R Client
  ☆19Updated 5 years ago
• stephaniehicks / scBatchPaper
  Code used for the single-cell RNA-Seq batch effects paper
  ☆10Updated 8 years ago