tidyomics / tidySingleCellExperimentLinks
Brings SingleCellExperiment objects to the tidyverse
☆37Updated 3 months ago
Alternatives and similar repositories for tidySingleCellExperiment
Users that are interested in tidySingleCellExperiment are comparing it to the libraries listed below
Sorting:
- Toolkit for Single-Cell Velocity☆59Updated 7 months ago
- Single-cell analysis with non-negative matrix factorization☆48Updated 6 months ago
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆78Updated last month
- Identify and correct invalid gene symbols☆62Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆70Updated 2 weeks ago
- ☆16Updated last year
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- Extension of SpatialExperiment with sf☆57Updated 3 weeks ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆70Updated last year
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 3 years ago
- A General Framework for Consensus Partitioning☆65Updated last week
- Clone of the Bioconductor repository for the basilisk package.☆29Updated 3 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 7 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Cell type pipes for R☆52Updated 2 years ago
- Normalize CITEseq Data☆67Updated 3 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 3 months ago
- Lightweight Iterative Gene set Enrichment in R☆58Updated last year
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 5 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Updated 4 years ago
- Interactive Cytometry Data Analysis☆66Updated 2 months ago