tidyomics / tidySingleCellExperimentLinks
Brings SingleCellExperiment objects to the tidyverse
☆37Updated 3 months ago
Alternatives and similar repositories for tidySingleCellExperiment
Users that are interested in tidySingleCellExperiment are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆48Updated 6 months ago
- Toolkit for Single-Cell Velocity☆59Updated 7 months ago
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- Extension of SpatialExperiment with sf☆57Updated last month
- ☆16Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆70Updated 2 weeks ago
- Identify and correct invalid gene symbols☆62Updated last year
- An R Package for Geneset Enrichment Workflows☆79Updated last month
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated last year
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Updated 4 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Cell type pipes for R☆52Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- A General Framework for Consensus Partitioning☆65Updated last week
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 3 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆70Updated last year
- Normalize CITEseq Data☆67Updated 3 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- R package containing the Cerebro application.☆40Updated 4 years ago
- ☆71Updated 8 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 7 months ago
- Interactive Cytometry Data Analysis☆66Updated 2 months ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆33Updated 5 months ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Shiny app for the analysis of single cell data☆26Updated 3 months ago
- ☆27Updated 4 years ago