Brings SingleCellExperiment objects to the tidyverse
☆37Nov 10, 2025Updated 5 months ago
Alternatives and similar repositories for tidySingleCellExperiment
Users that are interested in tidySingleCellExperiment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The blog of tidyomics☆14Jul 12, 2025Updated 9 months ago
- Brings SummarizedExperiment to the tidyverse☆30Mar 17, 2026Updated 3 weeks ago
- ☆10Oct 6, 2020Updated 5 years ago
- Seurat meets tidyverse. The best of both worlds.☆164Mar 3, 2026Updated last month
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆178Apr 2, 2026Updated last week
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆94Dec 18, 2024Updated last year
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Aug 13, 2020Updated 5 years ago
- A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and …☆32Jul 25, 2023Updated 2 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆23Jul 11, 2021Updated 4 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- Bioconductor data science introduction☆27Updated this week
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- Label elements within user drawn gates☆25Oct 10, 2025Updated 6 months ago
- Draw heatmap simply using a tidy data frame☆360Feb 7, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆18Oct 17, 2023Updated 2 years ago
- A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.☆21Jul 28, 2025Updated 8 months ago
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated 2 months ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆27Updated this week
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆152Feb 13, 2025Updated last year
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Sep 23, 2020Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- ☆16May 22, 2025Updated 10 months ago
- GitHub Actions for developing and maintaining Bioconductor packages☆13Nov 13, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆32May 20, 2025Updated 10 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- R client for the OmniPath web service☆163Mar 25, 2026Updated 2 weeks ago
- Visualising single-cell trajectories, including comparisons between two models 📈☆32Dec 9, 2021Updated 4 years ago
- High-Dimensional Undirected Graph Estimation☆13Jan 10, 2024Updated 2 years ago
- A tidy interface for coverage analysis☆32Feb 18, 2020Updated 6 years ago
- Issues and pull requests for BiocStyle should go here.☆14Oct 30, 2025Updated 5 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆223Mar 25, 2026Updated 2 weeks ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆10Nov 5, 2023Updated 2 years ago
- An r package that works as a wrapper to homologene☆49Nov 2, 2023Updated 2 years ago
- ☆75Feb 4, 2024Updated 2 years ago
- R package for Bioconductor submission☆40Dec 8, 2022Updated 3 years ago
- Extension of SpatialExperiment with sf☆57Updated this week
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago