statOmics / zingeR
zero-inflated negative binomial gene expression in R
☆20Updated 7 years ago
Alternatives and similar repositories for zingeR
Users that are interested in zingeR are comparing it to the libraries listed below
Sorting:
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- ☆19Updated 7 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- kallisto index tag extractor☆20Updated 5 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆68Updated 3 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆28Updated 9 months ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated last month
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 weeks ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Template for building a bioconductor workshop package using github actions☆20Updated 10 months ago