Bioconductor / OrchestratingSingleCellAnalysis
Content for the OSCA Book.
☆66Updated last year
Alternatives and similar repositories for OrchestratingSingleCellAnalysis:
Users that are interested in OrchestratingSingleCellAnalysis are comparing it to the libraries listed below
- An R interface to enrichR☆81Updated last month
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆105Updated last year
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- ☆53Updated 4 years ago
- "Principles of Spatial (Transcript)omics Analysis with Bioconductor" book☆44Updated this week
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆89Updated last month
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆57Updated 4 years ago
- A Shiny web app for mapping datasets using Seurat v4☆119Updated 2 months ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- Clone of the Bioconductor repository for the scater package.☆95Updated 6 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆104Updated 5 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆101Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆78Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆70Updated 3 years ago
- Simplify functional enrichment results☆112Updated 4 months ago
- ☆53Updated 3 months ago
- collection of notebooks with different cytoscape workflows☆49Updated last year
- The package wrapping the book, for deployment via the Bioconductor build system.☆84Updated 2 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆116Updated 4 months ago
- Testing differences in cell type proportions from single-cell data.☆95Updated this week
- Identify and correct invalid gene symbols☆56Updated 2 months ago
- Normalize CITEseq Data☆64Updated 7 months ago
- ☆47Updated 2 years ago
- ☆61Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆43Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- Toolkit for Single-Cell Velocity☆54Updated 2 weeks ago
- A tool for unsupervised projection of single cell RNA-seq data☆92Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year