pachterlab / BHGP_2022
☆21Updated 2 years ago
Alternatives and similar repositories for BHGP_2022:
Users that are interested in BHGP_2022 are comparing it to the libraries listed below
- ☆29Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated this week
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago
- ☆28Updated 6 years ago
- ☆42Updated 5 months ago
- An r package that works as a wrapper to homologene☆44Updated last year
- ☆37Updated 2 weeks ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆36Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- An analytics package for single cell data☆22Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆58Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Hierarchical classification of cells☆23Updated 8 months ago
- ☆35Updated last month
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Cell type pipes for R☆51Updated last year
- ☆37Updated 8 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 10 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆25Updated 2 months ago
- Individual level Differential Expression Analysis for Single cells☆23Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year