pachterlab / BHGP_2022
☆21Updated 2 years ago
Related projects: ⓘ
- ☆29Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 11 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆31Updated 2 years ago
- ☆28Updated 6 months ago
- RNA velocity validation☆23Updated 2 years ago
- .h5mu files interface for Seurat☆24Updated 9 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆36Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated 9 months ago
- Single Cell Epigenome-based Inference of Activity☆19Updated 11 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 8 months ago
- Individual level Differential Expression Analysis for Single cells☆22Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 4 years ago
- R package for specialised analysis of single cell data☆35Updated last year
- ☆34Updated 4 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated last year
- Functional Inference of Gene Regulation☆33Updated 2 months ago
- ☆37Updated 3 weeks ago
- A repository for benchmarking spatial deconvolution and mapping tools☆26Updated 2 weeks ago
- post-clustering differential expression test☆35Updated 5 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆12Updated last year
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆12Updated this week
- ☆29Updated 5 years ago
- An r package that works as a wrapper to homologene☆40Updated 10 months ago
- ☆36Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 6 months ago
- ☆35Updated 8 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆21Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆27Updated 3 months ago