Automated marker-based annotation of cell types
☆14Aug 8, 2022Updated 3 years ago
Alternatives and similar repositories for CellAnnotatoR
Users that are interested in CellAnnotatoR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆20Feb 16, 2026Updated 2 months ago
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Hierarchical classification of cells☆28Aug 2, 2024Updated last year
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- Single Cell Consensus Clustering with Speed☆23Dec 12, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆76Aug 21, 2023Updated 2 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆94Updated this week
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- Core utilities for single-cell RNA-seq☆13Apr 6, 2026Updated 3 weeks ago
- Signac☆27Mar 6, 2023Updated 3 years ago
- scoreCT: Automated Cell Type Annotation☆16Apr 18, 2022Updated 4 years ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆17Feb 21, 2024Updated 2 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- ☆14May 26, 2020Updated 5 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Mar 25, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆70Apr 22, 2026Updated last week
- Volume-regularized NMF☆18Apr 14, 2022Updated 4 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- Human brain, >200,000 nuclei☆25Jun 17, 2021Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA sequencing data☆13Jan 25, 2026Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Jun 14, 2020Updated 5 years ago
- Dimensionality reduction and batch integration methods for single cell data☆17Feb 9, 2023Updated 3 years ago
- https://molecular-neurogenetics.github.io/truster/☆12Jul 14, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 5 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- ☆23Mar 22, 2023Updated 3 years ago
- ☆15Sep 27, 2022Updated 3 years ago