Scripts to run and benchmark scRNA-seq cell cluster labeling methods
☆48May 23, 2020Updated 6 years ago
Alternatives and similar repositories for scRNAseq_cell_cluster_labeling
Users that are interested in scRNAseq_cell_cluster_labeling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comparison of single cell normalization strategies☆11Aug 13, 2021Updated 5 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 7 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Jan 6, 2021Updated 5 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆15Jun 5, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 4 years ago
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆216Jan 9, 2023Updated 3 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆202Mar 16, 2023Updated 3 years ago
- consistent quantification of external RNA-seq data sets☆58Dec 21, 2023Updated 2 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆114Aug 13, 2020Updated 6 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- ☆100Jan 27, 2021Updated 5 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆60May 14, 2026Updated 4 months ago
- ☆17Oct 3, 2022Updated 3 years ago
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Explore and share your scRNAseq clustering results☆53Sep 6, 2023Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Mar 13, 2024Updated 2 years ago
- Examples using Clustergrammer2 to explore high-dimensional datasets.☆40Aug 24, 2020Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆37Mar 25, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- R package to visualize scRNA sequencing data.☆21Feb 4, 2022Updated 4 years ago
- SCelVis - web-based visualization of single-cell data. Demo☆22Mar 20, 2024Updated 2 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆39Apr 21, 2026Updated 4 months ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆30Oct 10, 2025Updated 11 months ago
- ☆17May 15, 2024Updated 2 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆108Aug 1, 2023Updated 3 years ago