simslab / cluster_diffex2018Links
scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers
☆21Updated 3 years ago
Alternatives and similar repositories for cluster_diffex2018
Users that are interested in cluster_diffex2018 are comparing it to the libraries listed below
Sorting:
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 11 months ago
- ☆21Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆16Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- ☆23Updated last month
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 4 years ago
- ☆41Updated 4 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆23Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- ☆28Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆28Updated 5 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last month
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 weeks ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated 8 months ago