simslab / cluster_diffex2018Links
scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers
☆22Updated 4 years ago
Alternatives and similar repositories for cluster_diffex2018
Users that are interested in cluster_diffex2018 are comparing it to the libraries listed below
Sorting:
- ☆18Updated 4 years ago
- ☆21Updated 3 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 3 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- Algorithms for single-cell analysis☆29Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Updated 4 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Reference data for cell-type assignment with clustifyr☆13Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- Version 2.1.0 released☆23Updated 6 years ago
- Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schaffli…☆22Updated 4 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆24Updated 3 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 4 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 2 weeks ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆16Updated 3 years ago