Integrating zingeR with ZINB-WaVE weights
☆26Feb 15, 2018Updated 8 years ago
Alternatives and similar repositories for zinbwaveZinger
Users that are interested in zinbwaveZinger are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Mar 13, 2024Updated last year
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- This is the ensembldb development repository.☆36Aug 18, 2025Updated 6 months ago
- Differential Expression with Capture Efficiency adjustmeNT☆15Jan 3, 2023Updated 3 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Nov 14, 2020Updated 5 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 8 months ago
- A GenePattern module for running the ssGSEA method☆14Mar 3, 2025Updated 11 months ago
- ☆17Oct 3, 2022Updated 3 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Oct 7, 2024Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆71Jan 26, 2026Updated last month
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 6 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- Tools and methods for analysis of single cell assay data in R☆261Oct 17, 2025Updated 4 months ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆21Sep 9, 2020Updated 5 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Apr 25, 2023Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Jan 31, 2018Updated 8 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 5 years ago
- Calculate DNA methylation age using Horvath 2013 method☆11Aug 25, 2017Updated 8 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 6 months ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 7 months ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- ☆22May 6, 2022Updated 3 years ago
- ☆20Mar 16, 2019Updated 6 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- SKATE R Utilities☆10Jun 19, 2024Updated last year
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- ☆49Nov 28, 2025Updated 3 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Package providing an interface between HDF5 and R☆72Updated this week
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Feb 2, 2026Updated 3 weeks ago
- Effective Computing—Resources for Computational Biologists☆27Apr 17, 2020Updated 5 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 2 years ago
- Explore and share your scRNAseq clustering results☆50Sep 6, 2023Updated 2 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago