LuyiTian / sc_mixology
This contains the dataset for comparing scRNA-seq analysis methods
☆91Updated 4 years ago
Alternatives and similar repositories for sc_mixology:
Users that are interested in sc_mixology are comparing it to the libraries listed below
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- ☆46Updated 2 years ago
- Publication Page for MPAL Paper 2019☆80Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 6 months ago
- Single Cell Cluster Evaluation☆92Updated 3 years ago
- Code for the MNN manuscript figures☆51Updated 6 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆57Updated 2 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- ☆53Updated last month
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- ☆59Updated 5 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆66Updated last week
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- ☆60Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 8 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 8 months ago
- ☆53Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- ☆59Updated 6 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆67Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 10 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Unified access to several second-generation deconvolution methods☆66Updated last week