Alternatives and similar repositories for excelerate-scRNAseq:

Users that are interested in excelerate-scRNAseq are comparing it to the libraries listed below

• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆311Updated last year
• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆202Updated 4 months ago
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆279Updated last year
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆120Updated 9 months ago
• navinlabcode / copykat
  ☆225Updated 7 months ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆282Updated 4 years ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆294Updated 2 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆223Updated last year
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆313Updated this week
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated last year
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆513Updated this week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆183Updated this week
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆321Updated 2 months ago
• loosolab / TOBIAS
  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
  ☆208Updated 3 weeks ago
• Teichlab / cellphonedb
  ☆353Updated 3 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆264Updated 2 years ago
• IanevskiAleksandr / sc-type
  ☆253Updated 3 months ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆254Updated last year
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆130Updated 2 years ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆326Updated last week
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆220Updated 2 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆291Updated 3 years ago
• sdparekh / zUMIs
  zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
  ☆278Updated 7 months ago
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆189Updated 5 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆242Updated 2 weeks ago
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆399Updated this week
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆183Updated 2 years ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆451Updated 2 months ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆174Updated 10 months ago