Alternatives and similar repositories for excelerate-scRNAseq

Users that are interested in excelerate-scRNAseq are comparing it to the libraries listed below

• NBISweden / workshop-scRNAseq
  Single cell RNA sequencing analysis course
  ☆219Updated 3 months ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆317Updated 2 years ago
• crazyhottommy / scATACseq-analysis-notes
  my notes for scATACseq analysis
  ☆128Updated last year
• liulab-dfci / MAESTRO
  Single-cell Transcriptome and Regulome Analysis Pipeline
  ☆285Updated 2 years ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆299Updated 4 years ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆284Updated 2 years ago
• navinlabcode / copykat
  ☆242Updated last year
• tabdelaal / scRNAseq_Benchmark
  Bench-marking classification tools for scRNA-seq data
  ☆186Updated 3 years ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆229Updated 2 years ago
• IanevskiAleksandr / sc-type
  ☆269Updated 8 months ago
• quadbio / scRNAseq_analysis_vignette
  Tutorial for scRNA-seq data analysis beginners using R
  ☆206Updated 4 months ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆327Updated this week
• Teichlab / cellphonedb
  ☆356Updated 3 years ago
• cole-trapnell-lab / monocle-release
  ☆290Updated 2 years ago
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆243Updated last year
• cellgeni / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆140Updated 2 years ago
• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆433Updated last year
• dviraran / xCell
  Cell types enrichment analysis
  ☆198Updated last year
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆208Updated 9 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆191Updated this week
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆417Updated 2 months ago
• broadinstitute / ssGSEA2.0
  Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
  ☆289Updated 3 weeks ago
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆340Updated 7 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆341Updated this week
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆281Updated last month
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆149Updated 4 years ago
• czbiohub-sf / tabula-muris
  Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
  ☆192Updated 2 years ago
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆225Updated 2 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆309Updated 2 years ago