Toolkit for Single-Cell Velocity
☆59Jul 8, 2025Updated 8 months ago
Alternatives and similar repositories for velociraptor
Users that are interested in velociraptor are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the basilisk package.☆29Nov 8, 2025Updated 4 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆325Apr 23, 2024Updated last year
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 2 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Aug 4, 2017Updated 8 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 10 months ago
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- ☆64Mar 18, 2025Updated 11 months ago
- ☆75Feb 4, 2024Updated 2 years ago
- Simple simulation of single-cell RNA sequencing data☆233Jan 12, 2026Updated last month
- Dynamical systems methods for RNA velocity analysis☆24May 19, 2021Updated 4 years ago
- ☆13Mar 31, 2025Updated 11 months ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆13Updated this week
- Conversion between scRNA-seq objects☆201Jan 12, 2026Updated last month
- Extension of SpatialExperiment with sf☆57Feb 19, 2026Updated 2 weeks ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆30Sep 9, 2021Updated 4 years ago
- ☆11Sep 5, 2018Updated 7 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆141Dec 25, 2021Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Sep 5, 2022Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆315Nov 1, 2022Updated 3 years ago
- Explore and share your scRNAseq clustering results☆50Sep 6, 2023Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆263Jan 13, 2026Updated last month
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 4 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 7 months ago
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated 2 weeks ago
- R package for single cell and other data analysis using diffusion maps☆97Nov 9, 2025Updated 4 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆422Sep 4, 2025Updated 6 months ago
- RNA velocity estimation in R☆194Sep 14, 2023Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 4 years ago
- ☆12Feb 6, 2024Updated 2 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Aug 13, 2020Updated 5 years ago
- A container (S4 class) for matrix-like assays☆36Feb 5, 2026Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Nov 14, 2022Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated last month
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Nov 6, 2021Updated 4 years ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago