kevinrue / velociraptor
Toolkit for Single-Cell Velocity
☆54Updated 3 weeks ago
Alternatives and similar repositories for velociraptor:
Users that are interested in velociraptor are comparing it to the libraries listed below
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- Cell type pipes for R☆51Updated last year
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆71Updated 4 years ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆17Updated 4 years ago
- ☆53Updated 4 years ago
- ☆29Updated last year
- Single-cell analysis with non-negative matrix factorization☆42Updated 3 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- ☆16Updated 9 months ago
- ☆38Updated 4 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆25Updated 6 months ago
- Various utility functions for Seurat single-cell analysis☆43Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆26Updated last year
- Identify and correct invalid gene symbols☆57Updated 2 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- Clone of the Bioconductor repository for the scran package.☆40Updated 4 months ago
- Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory …☆13Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆31Updated last year
- Toolbox with R scripts☆38Updated 6 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 6 months ago
- Clone identification from single-cell data☆61Updated 2 years ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆15Updated 2 months ago