kevinrue / velociraptorLinks
Toolkit for Single-Cell Velocity
☆59Updated 2 months ago
Alternatives and similar repositories for velociraptor
Users that are interested in velociraptor are comparing it to the libraries listed below
Sorting:
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Single-cell analysis with non-negative matrix factorization☆45Updated 2 months ago
- Cell type pipes for R☆52Updated last year
- Normalize CITEseq Data☆66Updated 6 months ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 9 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- ☆55Updated 4 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 2 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Toolbox with R scripts☆38Updated 7 years ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- ☆43Updated 4 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated last week
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 2 weeks ago
- R package containing the Cerebro application.☆40Updated 3 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆17Updated 6 months ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆25Updated 4 years ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆21Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Extension of SpatialExperiment with sf☆55Updated last week
- R package for analysing single cell data☆58Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆16Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year