jgamache014 / snRNA-seq-workflowLinks
Human brain, >200,000 nuclei
☆24Updated 4 years ago
Alternatives and similar repositories for snRNA-seq-workflow
Users that are interested in snRNA-seq-workflow are comparing it to the libraries listed below
Sorting:
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- An R package for visualising cell-cell interactions☆43Updated last year
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- ☆25Updated 6 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated 2 years ago
- Collection of useful methods for single cell analysis☆14Updated last year
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- ☆43Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated 7 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- ☆48Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated last week
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆24Updated 5 months ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- ☆36Updated 2 months ago
- ☆12Updated 6 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- A General Framework for Consensus Partitioning☆63Updated 10 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆27Updated last month
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- Tools for assessing clustering robustness☆28Updated 2 months ago