tabdelaal / scRNAseq_BenchmarkLinks
Bench-marking classification tools for scRNA-seq data
☆186Updated 3 years ago
Alternatives and similar repositories for scRNAseq_Benchmark
Users that are interested in scRNAseq_Benchmark are comparing it to the libraries listed below
Sorting:
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆165Updated last year
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆285Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆211Updated 10 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆162Updated 2 years ago
- Cell types enrichment analysis☆198Updated last year
- my notes for scATACseq analysis☆128Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆208Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆202Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- Clustering scRNAseq by genotypes☆187Updated 8 months ago
- SingleCellNet: classify single cells across species and platforms☆138Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆247Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- R package to access DoRothEA's regulons☆149Updated last year
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆234Updated last month
- scATAC-seq data analysis tools and papers☆112Updated last month
- chromatin Variability Across Regions (of the genome!)☆178Updated last year
- scDIOR: Single cell data IO softwaRe☆144Updated 3 years ago
- Panoramic stitching of single cell data☆286Updated 3 weeks ago
- Multi-subject Single Cell Deconvolution☆266Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆289Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- ☆118Updated 6 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆190Updated 2 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year
- RNA velocity estimation in Python☆172Updated 3 months ago