jingshuw / descend
☆16Updated 3 years ago
Alternatives and similar repositories for descend:
Users that are interested in descend are comparing it to the libraries listed below
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 2 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆20Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- ☆12Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 2 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- A study to compare methods for clustering of scRNA-seq data☆42Updated 7 months ago
- ☆28Updated 6 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆37Updated 3 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆14Updated 5 years ago
- scID☆13Updated 3 years ago
- The million-scale method for single-cell analysis☆10Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 4 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated last month
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- Comparison of dimensionality reduction methods☆30Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 4 months ago