jingshuw / descend
☆16Updated 3 years ago
Alternatives and similar repositories for descend:
Users that are interested in descend are comparing it to the libraries listed below
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆13Updated 5 years ago
- Algorithms for single-cell analysis☆29Updated 3 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- ☆16Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 9 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 5 years ago
- single nuclei RNA-seq analysis toolbox☆10Updated 8 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- ☆12Updated 5 years ago
- The million-scale method for single-cell analysis☆10Updated last year
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆28Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆28Updated 6 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 4 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 4 years ago