A tool for unsupervised projection of single cell RNA-seq data
☆97Nov 24, 2020Updated 5 years ago
Alternatives and similar repositories for scmap
Users that are interested in scmap are comparing it to the libraries listed below
Sorting:
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- Doublet detection in single-cell RNA-seq data.☆97Feb 6, 2025Updated last year
- A study to compare methods for clustering of scRNA-seq data☆46Jul 19, 2024Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆211Jan 9, 2023Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- ☆59Sep 3, 2024Updated last year
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆16Jun 28, 2025Updated 8 months ago
- ☆75Feb 4, 2024Updated 2 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Dec 14, 2023Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆621Oct 10, 2025Updated 4 months ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆129Jun 28, 2021Updated 4 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Jul 10, 2023Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆170Jan 26, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆322Jul 28, 2020Updated 5 years ago
- ☆360Dec 9, 2021Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Aug 1, 2023Updated 2 years ago
- Accurate and robust imputation of scRNA-seq data☆98Aug 21, 2019Updated 6 years ago
- Documents used for workshops on single cell analysis☆27Feb 5, 2017Updated 9 years ago
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆313Nov 1, 2022Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆58Jan 30, 2026Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆47Jun 12, 2023Updated 2 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 6 years ago
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 3 years ago
- An R-based interface for loom files☆67Jul 9, 2020Updated 5 years ago
- Multi-Omics Factor Analysis☆259Sep 30, 2020Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Jun 22, 2022Updated 3 years ago
- ☆440Jan 8, 2026Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data