hemberg-lab / scmapLinks
A tool for unsupervised projection of single cell RNA-seq data
☆95Updated 4 years ago
Alternatives and similar repositories for scmap
Users that are interested in scmap are comparing it to the libraries listed below
Sorting:
- Mouse cell atlas☆61Updated 5 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- ☆63Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆85Updated 5 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- ☆73Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆44Updated last year
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- ☆62Updated 6 years ago
- ☆47Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- R package for semi-supervised single-cell data integration☆90Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago