Alternatives and similar repositories for scmap

Users that are interested in scmap are comparing it to the libraries listed below

• ggjlab / scMCA
  Mouse cell atlas
  ☆61Updated 5 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆98Updated 4 years ago
• kharchenkolab / dropEst
  Pipeline for initial analysis of droplet-based single-cell RNA-seq data
  ☆95Updated 3 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆86Updated 6 months ago
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆69Updated 5 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 4 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆44Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆45Updated 5 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆95Updated 5 years ago
• AllonKleinLab / SPRING_dev
  ☆70Updated last year
• Coolgenome / iTALK
  ☆62Updated 6 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆110Updated 2 years ago
• cellgeni / batchbench
  ☆47Updated 3 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆81Updated 3 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆64Updated last year
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆40Updated 2 years ago
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆86Updated 6 years ago
• Teichlab / cellity
  ☆37Updated 9 years ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆105Updated last year
• MarioniLab / DropletUtils
  Clone of the Bioconductor repository for the DropletUtils package.
  ☆62Updated 2 months ago
• livnatje / ImmuneResistance
  This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…
  ☆73Updated 7 years ago
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆43Updated 6 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• jcao89757 / SCINA
  SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
  ☆71Updated 3 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated last year
• mohuangx / SAVER
  Single-cell RNA-seq Gene Expression Recovery
  ☆111Updated 11 months ago