Winnie09 / imputationBenchmark
benchmark for single-cell RNA-seq imputation methods
☆25Updated last year
Alternatives and similar repositories for imputationBenchmark:
Users that are interested in imputationBenchmark are comparing it to the libraries listed below
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- RNA velocity validation☆22Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- ☆40Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- ☆35Updated last month
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- ☆22Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆32Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- Fast motif matching in R☆47Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆29Updated 2 years ago
- CiteFuse:☆28Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 11 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆37Updated 2 weeks ago