theislab / zellkonverterLinks
Conversion between scRNA-seq objects
☆184Updated 3 weeks ago
Alternatives and similar repositories for zellkonverter
Users that are interested in zellkonverter are comparing it to the libraries listed below
Sorting:
- AUCell: score single cells with gene regulatory networks☆167Updated last year
- reticulate-free single cell format conversion☆184Updated last month
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆159Updated last month
- ☆174Updated 4 months ago
- Multiome GRN inference.☆127Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆167Updated 5 months ago
- Cell type prioritization in single-cell data☆124Updated 10 months ago
- Scaling Single Cell Analysis to Millions of Cells☆223Updated this week
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆214Updated last year
- Methods for detecting doublets in single-cell sequencing data☆205Updated last month
- Fast Wilcoxon and auROC☆188Updated 10 months ago
- Interfaces for HDF5-based Single Cell File Formats☆166Updated last year
- scDIOR: Single cell data IO softwaRe☆146Updated 3 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆207Updated last month
- Gene set scoring for single-cell data☆162Updated 4 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆142Updated last month
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- Interpretation of cell states using reference single-cell maps☆290Updated last month
- Easy single cell analysis platform for enrichment☆188Updated 3 weeks ago
- Convert between AnnData and SingleCellExperiment☆139Updated last week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- ☆171Updated this week
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- Some tools for plotting single-cell data☆175Updated 3 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆205Updated 2 years ago