Conversion between scRNA-seq objects
☆209May 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for zellkonverter
Users that are interested in zellkonverter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆433May 11, 2026Updated 2 weeks ago
- High dimensional weighted gene co-expression network analysis☆474Mar 13, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆251May 20, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆192Mar 9, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆223Mar 2, 2026Updated 2 months ago
- A tool for semi-automatic cell type classification☆483May 22, 2026Updated last week
- Multi-sample multi-group scRNA-seq analysis tools☆229Apr 28, 2026Updated last month
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆327Nov 1, 2022Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 11 months ago
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 3 weeks ago
- RNA Velocity generalized through dynamical modeling☆501Feb 25, 2026Updated 3 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆290Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast Wilcoxon and auROC☆210May 5, 2026Updated 3 weeks ago
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 7 months ago
- Spatial omics analysis toolbox☆374Updated this week
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Convert between AnnData and SingleCellExperiment☆150Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆335Apr 23, 2024Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆294Dec 16, 2025Updated 5 months ago
- Scaling Single Cell Analysis to Millions of Cells☆285May 12, 2026Updated 2 weeks ago
- A toolkit for single-cell immune profiling☆368May 12, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- reticulate-free single cell format conversion☆217Mar 16, 2026Updated 2 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 4 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated last year
- AnnData interoperability in R☆177May 19, 2026Updated last week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆188Mar 27, 2025Updated last year
- Gene set variation analysis☆242May 19, 2026Updated last week
- Simple simulation of single-cell RNA sequencing data☆234May 20, 2026Updated last week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆437Updated this week
- Interfaces for HDF5-based Single Cell File Formats☆175Nov 4, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆300May 11, 2026Updated 2 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆429Feb 4, 2026Updated 3 months ago
- Latent Embedding Multivariate Regression☆101May 19, 2026Updated last week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆439Apr 11, 2026Updated last month
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- Fit Gamma-Poisson Generalized Linear Models Reliably☆122Mar 17, 2025Updated last year