Conversion between scRNA-seq objects
☆210May 5, 2026Updated last month
Alternatives and similar repositories for zellkonverter
Users that are interested in zellkonverter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to help convert different single-cell data formats to each other☆469Feb 20, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆435May 11, 2026Updated last month
- High dimensional weighted gene co-expression network analysis☆478Mar 13, 2026Updated 3 months ago
- Methods for detecting doublets in single-cell sequencing data☆253Updated this week
- AUCell: score single cells with gene regulatory networks☆195Mar 9, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆225Mar 2, 2026Updated 3 months ago
- A tool for semi-automatic cell type classification☆489May 22, 2026Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆233Jun 4, 2026Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆331Nov 1, 2022Updated 3 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆300Jun 17, 2025Updated last year
- CellRank: dynamics from multi-view single-cell data☆454Jun 9, 2026Updated last week
- RNA Velocity generalized through dynamical modeling☆505Feb 25, 2026Updated 3 months ago
- Fast Wilcoxon and auROC☆212May 5, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 8 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆296Updated this week
- Spatial omics analysis toolbox☆376Jun 2, 2026Updated 2 weeks ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- Convert between AnnData and SingleCellExperiment☆151Updated this week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆339Apr 23, 2024Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆299Dec 16, 2025Updated 6 months ago
- Scaling Single Cell Analysis to Millions of Cells☆289Updated this week
- A toolkit for single-cell immune profiling☆369Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- reticulate-free single cell format conversion☆218Mar 16, 2026Updated 3 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆180Jan 8, 2026Updated 5 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated 2 years ago
- AnnData interoperability in R☆187Jun 8, 2026Updated last week
- Gene set variation analysis☆245Updated this week
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆191Mar 27, 2025Updated last year
- Simple simulation of single-cell RNA sequencing data☆235May 20, 2026Updated 3 weeks ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆442Jun 2, 2026Updated 2 weeks ago
- Interfaces for HDF5-based Single Cell File Formats☆177Nov 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆302May 11, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 4 months ago
- Latent Embedding Multivariate Regression☆102May 19, 2026Updated 3 weeks ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆447Apr 11, 2026Updated 2 months ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- Fit Gamma-Poisson Generalized Linear Models Reliably☆124May 26, 2026Updated 3 weeks ago