Alternatives and similar repositories for zellkonverter

Users that are interested in zellkonverter are comparing it to the libraries listed below

• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆173Updated 2 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆118Updated 11 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆182Updated 3 weeks ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆164Updated last year
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆166Updated 4 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆205Updated 2 weeks ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆213Updated last year
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆152Updated 2 weeks ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 9 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆125Updated last year
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆145Updated 3 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆124Updated 10 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆187Updated 9 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆223Updated 2 weeks ago
• neurorestore / Libra
  ☆173Updated 3 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆159Updated 3 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆167Updated last year
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆205Updated 2 weeks ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆167Updated last year
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆186Updated last week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆231Updated 2 years ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆119Updated last week
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆133Updated 6 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆107Updated 2 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆197Updated 3 months ago
• 10XGenomics / loupeR
  Convert Seurat objects to 10x Genomics Loupe files.
  ☆135Updated last month
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆140Updated 3 weeks ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆121Updated 2 years ago
• Irrationone / cellassign
  Automated, probabilistic assignment of cell types in scRNA-seq data
  ☆204Updated 2 years ago