Alternatives and similar repositories for zellkonverter:

Users that are interested in zellkonverter are comparing it to the libraries listed below

• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆144Updated 3 months ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆191Updated last month
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆115Updated 7 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆121Updated last year
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆149Updated last week
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆163Updated 2 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆201Updated 8 months ago
• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆162Updated last year
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆145Updated 5 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆158Updated last month
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆192Updated 2 weeks ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆152Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆104Updated 2 years ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆139Updated 3 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆118Updated 6 months ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆125Updated 6 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆114Updated last week
• neurorestore / Libra
  ☆166Updated 8 months ago
• constantAmateur / SoupX
  R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
  ☆273Updated 2 years ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆174Updated 2 weeks ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆190Updated 2 weeks ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆204Updated last week
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆110Updated last week
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆126Updated 2 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆163Updated last year
• swolock / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆148Updated 4 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆106Updated 3 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆124Updated 11 months ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆227Updated last year
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆131Updated 5 months ago