Alternatives and similar repositories for PseudoreplicationPaper

Users that are interested in PseudoreplicationPaper are comparing it to the libraries listed below

• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 3 months ago
• lhe17 / nebula
  ☆48Updated 2 months ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆76Updated 3 months ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆39Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆41Updated 4 years ago
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆46Updated 4 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆46Updated 3 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆98Updated 8 months ago
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆93Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 3 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• Teichlab / cellity
  ☆38Updated 9 years ago
• elimereu / matchSCore2
  ☆56Updated 5 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆87Updated 2 months ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆95Updated 2 weeks ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆49Updated 2 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆46Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆92Updated this week
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆66Updated 4 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 3 years ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆59Updated 3 years ago
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆53Updated 5 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆99Updated 4 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆21Updated 3 years ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆51Updated 7 years ago