kdzimm / PseudoreplicationPaperLinks
Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication in Single-Cell" study
☆20Updated 4 years ago
Alternatives and similar repositories for PseudoreplicationPaper
Users that are interested in PseudoreplicationPaper are comparing it to the libraries listed below
Sorting:
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- ☆29Updated 2 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Cell type pipes for R☆51Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆41Updated 4 years ago
- ☆41Updated 3 weeks ago
- Normalize CITEseq Data☆65Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Various utility functions for Seurat single-cell analysis☆47Updated 5 months ago
- An r package that works as a wrapper to homologene☆45Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- ☆55Updated 4 years ago
- An R package to analyze single-cell V(D)J data☆26Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 2 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Clone of the Bioconductor repository for the scran package.☆41Updated 8 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- ☆41Updated 4 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- R package for analysing single cell data☆55Updated 2 years ago
- Clone identification from single-cell data☆62Updated 2 years ago