kdzimm / PseudoreplicationPaper
Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication in Single-Cell" study
☆20Updated 4 years ago
Alternatives and similar repositories for PseudoreplicationPaper:
Users that are interested in PseudoreplicationPaper are comparing it to the libraries listed below
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- An r package that works as a wrapper to homologene☆44Updated last year
- Cell type pipes for R☆51Updated last year
- ☆40Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- ☆37Updated 3 weeks ago
- ☆40Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆29Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Various utility functions for Seurat single-cell analysis☆46Updated 4 months ago
- Toolkit for Single-Cell Velocity☆55Updated 3 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆54Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆74Updated 11 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis☆17Updated 5 years ago
- scWGCNA☆59Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 7 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Normalize CITEseq Data☆65Updated last week
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆22Updated 3 weeks ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month