LTLA / SingleCellThoughtsLinks
Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
☆47Updated last month
Alternatives and similar repositories for SingleCellThoughts
Users that are interested in SingleCellThoughts are comparing it to the libraries listed below
Sorting:
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 2 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Identify and correct invalid gene symbols☆59Updated 11 months ago
- ☆63Updated 7 months ago
- ☆55Updated 8 months ago
- post-clustering differential expression test☆36Updated 6 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last year
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 3 months ago
- Clone of the Bioconductor repository for the scater package.☆97Updated 7 months ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Toolkit for Single-Cell Velocity☆59Updated 3 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆67Updated 2 months ago
- Normalize CITEseq Data☆66Updated 6 months ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 4 years ago
- ☆55Updated 4 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 2 weeks ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 8 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 7 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year