Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
☆197Mar 16, 2023Updated 3 years ago
Alternatives and similar repositories for tabula-muris
Users that are interested in tabula-muris are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- ☆86Jul 13, 2020Updated 5 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆111Aug 13, 2020Updated 5 years ago
- Bench-marking classification tools for scRNA-seq data☆195Jun 9, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tabula Muris Senis☆108Jun 5, 2023Updated 2 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆180Dec 18, 2021Updated 4 years ago
- ☆48Jun 21, 2019Updated 6 years ago
- Analysis of single cell RNA-seq data course☆679Apr 11, 2022Updated 3 years ago
- RNA velocity estimation in R☆197Sep 14, 2023Updated 2 years ago
- Explore and share your scRNAseq clustering results☆50Sep 6, 2023Updated 2 years ago
- SingleCellNet: classify single cells across species and platforms☆140Aug 21, 2023Updated 2 years ago
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Mouse cell atlas☆62Apr 18, 2020Updated 5 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆109Jul 3, 2023Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆480Apr 5, 2024Updated last year
- R toolkit for single cell genomics☆2,694Updated this week
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆440Mar 19, 2026Updated last week
- Panoramic stitching of single cell data☆297Jul 14, 2025Updated 8 months ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- ☆294Jul 15, 2022Updated 3 years ago
- easy access to benchmark datasets☆50Aug 17, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆95Jul 23, 2024Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated last month
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Mar 16, 2024Updated 2 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆631Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆333Jul 28, 2020Updated 5 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆379Oct 3, 2024Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆307Mar 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆22Dec 12, 2020Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Dec 27, 2022Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- ☆361Dec 9, 2021Updated 4 years ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆212Jan 9, 2023Updated 3 years ago