czbiohub-sf / tabula-murisLinks
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
☆193Updated 2 years ago
Alternatives and similar repositories for tabula-muris
Users that are interested in tabula-muris are comparing it to the libraries listed below
Sorting:
- Cell types enrichment analysis☆202Updated last year
- Bench-marking classification tools for scRNA-seq data☆189Updated 3 years ago
- Tools and methods for analysis of single cell assay data in R☆253Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- RNA velocity estimation in Python☆172Updated this week
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Java tools for analyzing Drop-seq data☆130Updated last week
- Clustering scRNAseq by genotypes☆189Updated 10 months ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆293Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆113Updated 11 months ago
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- ☆118Updated 7 years ago
- Simple simulation of single-cell RNA sequencing data☆231Updated last month
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- R package to access DoRothEA's regulons☆151Updated last year
- my notes for scATACseq analysis☆132Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆205Updated 2 years ago
- RNA velocity estimation in R☆189Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆237Updated last month
- URD - Reconstruction of Branching Developmental Trajectories☆124Updated 4 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆296Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- ☆254Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆195Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆166Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆214Updated last year