czbiohub-sf / tabula-murisLinks
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
☆192Updated 2 years ago
Alternatives and similar repositories for tabula-muris
Users that are interested in tabula-muris are comparing it to the libraries listed below
Sorting:
- Cell types enrichment analysis☆198Updated last year
- Bench-marking classification tools for scRNA-seq data☆186Updated 3 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- RNA velocity estimation in Python☆172Updated 4 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆289Updated 2 years ago
- URD - Reconstruction of Branching Developmental Trajectories☆124Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆141Updated last year
- Tools and methods for analysis of single cell assay data in R☆249Updated last year
- Simple simulation of single-cell RNA sequencing data☆230Updated 2 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year
- ☆118Updated 7 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- my notes for scATACseq analysis☆131Updated last year
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆235Updated last week
- R package to access DoRothEA's regulons☆149Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆204Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆210Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 9 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- Clone of the Bioconductor repository for the SingleR package.☆193Updated last month
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆164Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆145Updated 3 years ago
- RNA velocity estimation in R☆188Updated last year
- Java tools for analyzing Drop-seq data☆130Updated last week