czbiohub-sf / tabula-muris
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
☆190Updated last year
Alternatives and similar repositories for tabula-muris:
Users that are interested in tabula-muris are comparing it to the libraries listed below
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- Cell types enrichment analysis☆192Updated 9 months ago
- Benchmarking computational single cell ATAC-seq methods☆180Updated 4 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆265Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆160Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆191Updated 5 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Bench-marking classification tools for scRNA-seq data☆183Updated 2 years ago
- my notes for scATACseq analysis☆121Updated 10 months ago
- ☆118Updated 6 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆279Updated last year
- Java tools for analyzing Drop-seq data☆125Updated 3 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆196Updated 11 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆311Updated last year
- ☆225Updated 8 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆285Updated 4 years ago
- Clustering scRNAseq by genotypes☆175Updated 3 months ago
- SingleCellNet: classify single cells across species and platforms☆135Updated last year
- chromatin Variability Across Regions (of the genome!)☆168Updated 7 months ago
- Panoramic stitching of single cell data☆273Updated 10 months ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- RNA velocity estimation in R☆186Updated last year
- ☆163Updated 6 months ago
- Scissor package☆207Updated 9 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆266Updated 5 months ago
- Detect doublets in single-cell RNA-seq data☆141Updated 4 years ago
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆208Updated last month