comprna / CHEUI
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
☆39Updated 9 months ago
Alternatives and similar repositories for CHEUI
Users that are interested in CHEUI are comparing it to the libraries listed below
Sorting:
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 2 months ago
- ☆23Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- ☆14Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated last month
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last week
- ☆35Updated 2 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆51Updated this week
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 5 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- SingleCell Nanopore sequencing data analysis☆59Updated 4 months ago
- Error correction of ONT transcript reads☆58Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆89Updated last month
- Reconstruction of focal amplifications with long reads☆21Updated this week
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆26Updated last week
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated last year
- Set of tools to manipulate and visualize modified base bam files☆55Updated 2 years ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- ☆40Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated last month
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆22Updated last month