Alternatives and similar repositories for CHEUI:

Users that are interested in CHEUI are comparing it to the libraries listed below

• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 2 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 10 months ago
• gaoyubang / nanom6A
  ☆22Updated 2 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last month
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆15Updated this week
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆17Updated last year
• sihaohuanguc / NanoSPA
  ☆14Updated last year
• novoalab / nanoRMS
  Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…
  ☆23Updated 2 years ago
• awjga / PORE-cupine
  First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing
  ☆14Updated last year
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated last year
• LappalainenLab / lorals
  ☆33Updated last year
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 4 months ago
• Janga-Lab / Penguin
  Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data
  ☆13Updated 3 years ago
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆24Updated 9 months ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆12Updated last year
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆58Updated 4 months ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆37Updated 3 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated 10 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆59Updated last year
• yulab2021 / TandemMod
  ☆15Updated 11 months ago
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆44Updated 4 months ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆56Updated 2 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
  ☆30Updated 11 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆45Updated 2 years ago
• dieterich-lab / JACUSA2
  New version of JACUSA -> 2.0
  ☆24Updated last month
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆18Updated this week
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆17Updated 10 months ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• haotianteng / Xron
  Xron - an omni basecaller for ONT reads.
  ☆20Updated 3 months ago