comprna / CHEUILinks
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
☆40Updated last year
Alternatives and similar repositories for CHEUI
Users that are interested in CHEUI are comparing it to the libraries listed below
Sorting:
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆17Updated 5 months ago
- ☆34Updated last year
- ☆23Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆32Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆62Updated 10 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 2 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆36Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 5 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- ☆33Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆96Updated 3 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- for visual evaluation of read support for structural variation☆54Updated last year
- Long-read splice alignment with high accuracy☆64Updated 10 months ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆58Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆24Updated 4 months ago
- ☆14Updated last year