comprna / CHEUILinks
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
☆42Updated last year
Alternatives and similar repositories for CHEUI
Users that are interested in CHEUI are comparing it to the libraries listed below
Sorting:
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 3 years ago
- ☆38Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ☆38Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 3 months ago
- ☆23Updated 3 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆58Updated 10 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆76Updated last month
- for visual evaluation of read support for structural variation☆55Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 3 weeks ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Updated 4 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated last year
- Reconstruction of focal amplifications with long reads☆23Updated last month
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 3 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆35Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- new repo☆28Updated 4 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆20Updated 3 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 2 months ago