Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
☆46Jun 7, 2026Updated 3 months ago
Alternatives and similar repositories for CHEUI
Users that are interested in CHEUI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Detection of m6A from direct RNA-Seq data☆134May 19, 2025Updated last year
- ☆13Oct 5, 2023Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing☆15Aug 27, 2025Updated last year
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- Nanopore raw signal segmentation and RNA modification estimation.☆13Mar 3, 2026Updated 6 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 4 years ago
- ☆19Mar 31, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆88Aug 27, 2026Updated 3 weeks ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 5 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- ☆10Mar 11, 2025Updated last year
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆59Oct 14, 2024Updated last year
- ☆31Nov 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Apr 18, 2024Updated 2 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- ☆14Aug 24, 2026Updated 3 weeks ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 6 months ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆171Aug 25, 2026Updated 3 weeks ago
- ☆84Jan 6, 2025Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- ☆24Jul 30, 2025Updated last year
- ☆14Jun 10, 2025Updated last year
- Master of Pores 2☆23Dec 4, 2024Updated last year
- ☆16Dec 22, 2025Updated 8 months ago
- ☆25Dec 24, 2022Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago