DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
☆19Apr 11, 2023Updated 3 years ago
Alternatives and similar repositories for Dinopore
Users that are interested in Dinopore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- ☆10Mar 11, 2025Updated last year
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- ☆14Oct 5, 2023Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆45Jun 7, 2026Updated last week
- ☆25Dec 24, 2022Updated 3 years ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Analyse RNA feature distributions.☆19Dec 16, 2024Updated last year
- ☆20Mar 31, 2025Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated last year
- Master of Pores 2☆23Dec 4, 2024Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- ☆12Nov 18, 2024Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 9 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 8 months ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 3 years ago
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆67Oct 11, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆165Nov 7, 2024Updated last year
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 4 months ago
- ☆12Jun 3, 2026Updated last week
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Jul 24, 2025Updated 10 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 9 months ago
- ☆13Jun 10, 2025Updated last year
- A bioinformatics tool for working with modified bases☆267Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Oct 14, 2024Updated last year
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated 3 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 3 months ago