uedaLabR / nanoDocLinks
RNA modification detection using Nanopore raw reads with Deep One Class classification
☆19Updated 4 years ago
Alternatives and similar repositories for nanoDoc
Users that are interested in nanoDoc are comparing it to the libraries listed below
Sorting:
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Updated 4 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 6 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- ☆36Updated 2 years ago
- ☆34Updated last year
- ☆33Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆14Updated 3 years ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆54Updated 6 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆29Updated 5 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 2 months ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 6 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 3 weeks ago
- Long-read splice alignment with high accuracy☆63Updated 11 months ago
- Structural variant merging tool☆54Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- ☆29Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆66Updated last week
- ☆32Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 3 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Master of Pores 2☆23Updated 9 months ago