Alternatives and similar repositories for riser:

Users that are interested in riser are comparing it to the libraries listed below

• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆24Updated 10 months ago
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆15Updated last month
• sihaohuanguc / NanoSPA
  ☆14Updated last year
• gaoyubang / nanom6A
  ☆23Updated 2 years ago
• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 2 years ago
• Shians / NanoMethViz
  ☆26Updated 3 weeks ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆64Updated last month
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated 2 weeks ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 8 months ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 5 months ago
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆17Updated last year
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆37Updated 4 months ago
• timplab / nanopore-methylation-utilities
  ☆29Updated 4 years ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated 11 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆52Updated 2 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• vpc-ccg / freddie
  Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
  ☆17Updated 2 years ago
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆38Updated 2 weeks ago
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆26Updated last month
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated 11 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 11 months ago
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆28Updated last year
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆18Updated 11 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated last month
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆69Updated last week
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated last year
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
  ☆30Updated last year
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago