Alternatives and similar repositories for Whole_Transcriptome_Paper

Users that are interested in Whole_Transcriptome_Paper are comparing it to the libraries listed below

• dieterich-lab / single-cell-nanopore
  Workflow for Nanopore Sequencing of 10x single cell libraries
  ☆19Updated 10 months ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• mortazavilab / cerberus
  ☆20Updated last week
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated last month
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆38Updated 10 months ago
• zhongmicai / Hic_tools_collection
  ☆12Updated 6 years ago
• zhaoshuoxp / Pipelines-Wrappers
  Shell wrappers for bulk and 10X single cell NGS pipelines, RNAseq, ChIPseq, ATACseq, CUT&RUN/TAG, WGS, etc.
  ☆16Updated 2 weeks ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆14Updated 7 months ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆34Updated 6 months ago
• pk7zuva / Circle_finder
  Micro DNA identification
  ☆23Updated 4 years ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• Xinglab / rMATS-long
  ☆34Updated 2 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆63Updated 8 months ago
• iaaaka / evo-devo
  ☆12Updated 4 years ago
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• TRON-Bioinformatics / tronflow-alignment
  Nextflow pipeline for BWA, BWA2 and STAR alignments
  ☆12Updated last year
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆20Updated 6 years ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆28Updated 2 years ago
• tgen / bisbee
  alternative splicing analysis pipeline
  ☆20Updated 4 years ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 8 months ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• gagneurlab / splicemap
  ☆23Updated 6 months ago