adnaniazi / tailfindrLinks
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
☆54Updated 10 months ago
Alternatives and similar repositories for tailfindr
Users that are interested in tailfindr are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆62Updated 10 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 2 weeks ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 2 weeks ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- BigWig and BAM utilities☆97Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Somatic structural variant caller for long-read data☆79Updated 2 months ago
- python plotly Circos from VCF☆38Updated last year
- Human reference genome analysis sets☆53Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated last month
- The Flexible Demultiplexer☆34Updated this week
- ☆51Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated this week
- for visual evaluation of read support for structural variation☆54Updated last year
- Evolutionary Transcriptomics with R☆45Updated last week
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- ☆29Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆66Updated 5 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago