adnaniazi / tailfindrLinks
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
☆54Updated last year
Alternatives and similar repositories for tailfindr
Users that are interested in tailfindr are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Evolutionary Transcriptomics with R☆47Updated last week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆48Updated last week
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated last month
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆45Updated 4 months ago
- Human reference genome analysis sets☆56Updated 2 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- BigWig and BAM utilities☆98Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- python plotly Circos from VCF☆40Updated last year
- The Flexible Demultiplexer☆36Updated 2 months ago
- ☆38Updated 2 years ago
- ☆44Updated last year
- Somatic structural variant caller for long-read data☆83Updated this week
- processing 10x genomics reads☆26Updated 6 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Reconstruction of focal amplifications with long reads☆22Updated 2 weeks ago
- Algorithm to detect germline and de novo transposon insertions☆31Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago