adnaniazi / tailfindrLinks
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
☆55Updated last year
Alternatives and similar repositories for tailfindr
Users that are interested in tailfindr are comparing it to the libraries listed below
Sorting:
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated last week
- Long-read splice alignment with high accuracy☆64Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- BigWig and BAM utilities☆99Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- for visual evaluation of read support for structural variation☆55Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆23Updated 2 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 6 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- ☆44Updated last year
- The Flexible Demultiplexer☆37Updated 3 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- python plotly Circos from VCF☆40Updated last year
- Powerful statistics for VCF files☆73Updated last month
- Reconstruction of focal amplifications with long reads☆23Updated last month
- Evolutionary Transcriptomics with R☆48Updated last month
- ☆30Updated 4 years ago
- ☆38Updated 2 years ago
- ☆26Updated 8 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆76Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Human reference genome analysis sets☆56Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago