modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
☆16Apr 29, 2024Updated 2 years ago
Alternatives and similar repositories for modPhred
Users that are interested in modPhred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 4 years ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jun 20, 2026Updated last month
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆25Dec 24, 2022Updated 3 years ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 4 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 5 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆167Jul 17, 2026Updated last week
- snapper☆14Jul 8, 2024Updated 2 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 10 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆45Jun 7, 2026Updated last month
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- ☆31Nov 28, 2024Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Detection of m6A from direct RNA-Seq data☆133May 19, 2025Updated last year
- ☆49Nov 7, 2024Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Master of Pores 2☆23Dec 4, 2024Updated last year
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Mar 19, 2026Updated 4 months ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Apr 4, 2025Updated last year
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Jul 24, 2025Updated last year
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- Research release basecalling models and configurations☆120May 20, 2026Updated 2 months ago
- ☆20Nov 17, 2025Updated 8 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆23Jan 23, 2026Updated 6 months ago
- ☆16Apr 2, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Analyse RNA feature distributions.☆20Dec 16, 2024Updated last year
- Plotting tools for nanopore methylation data☆95Jul 28, 2025Updated last year
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 3 months ago