novoalab / modPhredLinks
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
☆16Updated last year
Alternatives and similar repositories for modPhred
Users that are interested in modPhred are comparing it to the libraries listed below
Sorting:
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆29Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆31Updated last year
- A battery of methylation tools for PacBio HiFi reads☆40Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Variant annotation and merging pipeline☆39Updated last month
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- ☆32Updated 2 years ago
- ☆29Updated 4 years ago
- ☆23Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆27Updated last week
- perSVade: personalized Structural Variation detection☆40Updated last month
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- ☆32Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 3 years ago
- Structural variant merging tool☆53Updated last year
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆81Updated 5 months ago
- WDL workflows for variant calling and assembly using ONT☆35Updated this week