novoalab / modPhredLinks
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
☆16Updated last year
Alternatives and similar repositories for modPhred
Users that are interested in modPhred are comparing it to the libraries listed below
Sorting:
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 7 months ago
- ☆31Updated last year
- Variant annotation and merging pipeline☆39Updated 3 months ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- A battery of methylation tools for PacBio HiFi reads☆43Updated last month
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆49Updated last year
- ☆24Updated last month
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated last month
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆15Updated last week
- ☆34Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 7 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- ☆36Updated 3 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- ☆21Updated 8 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 3 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆20Updated last year
- Structural variant merging tool☆55Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated last month