novoalab / modPhredLinks
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
☆16Updated last year
Alternatives and similar repositories for modPhred
Users that are interested in modPhred are comparing it to the libraries listed below
Sorting:
- ☆31Updated last year
- ☆49Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A battery of methylation tools for PacBio HiFi reads☆43Updated last week
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆50Updated 8 months ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Structural variant caller☆55Updated 3 years ago
- A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.☆36Updated 7 months ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 4 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 8 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Variant annotation and merging pipeline☆39Updated 3 months ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆37Updated 6 months ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆33Updated 3 years ago
- Tumor-normal variant calling workflow using HiFi reads☆23Updated last month
- ☆30Updated 4 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- WDL workflows for variant calling and assembly using ONT☆37Updated last month
- ☆83Updated 8 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 8 months ago
- ☆25Updated 2 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆58Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago