direct RNA nanopore sequencing barcode design and demultiplexing
☆20Mar 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for WarpDemuX
Users that are interested in WarpDemuX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Super-fast and accurate demultiplexing of direct RNA-seq runs.☆20Jul 22, 2025Updated 8 months ago
- ☆12Jun 23, 2025Updated 9 months ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated 2 weeks ago
- A package to run real time analysis of nanopore methylation data.☆21Jan 27, 2026Updated last month
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆39Aug 2, 2024Updated last year
- ☆82Jan 6, 2025Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 6 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated 10 months ago
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆129Dec 12, 2025Updated 3 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆20May 14, 2021Updated 4 years ago
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Updated this week
- Analysis pipeline for RNA structural probing mutational profiling data sequenced on Nanopore devices☆11Feb 10, 2024Updated 2 years ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis☆17Jan 4, 2021Updated 5 years ago
- GUI for inspecting POD5 files☆34Dec 19, 2024Updated last year
- Updated and optimized fork of BSMAP☆24Dec 28, 2020Updated 5 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆44Jul 19, 2024Updated last year
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- Minotour API, web and client code☆30Feb 15, 2023Updated 3 years ago
- Confidence Estimates with KalmanNet☆13Oct 6, 2021Updated 4 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 8 months ago
- De novo construction of isoforms from long-read data☆35Jun 10, 2025Updated 9 months ago
- ☆29Sep 11, 2025Updated 6 months ago
- ☆26Dec 29, 2020Updated 5 years ago
- A simple toolkit for manipulating nanopore signal data☆19Mar 14, 2026Updated last week
- Predictive kmer models for development use☆63Jun 6, 2023Updated 2 years ago
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆11Jun 12, 2024Updated last year
- ☆10Mar 11, 2025Updated last year
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆194Feb 25, 2026Updated 3 weeks ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- WDL workflows for variant calling and assembly using ONT☆39Updated this week
- ☆18Dec 22, 2017Updated 8 years ago
- Neural multiclass ab initio reconstruction for cryo-EM.☆13Dec 5, 2024Updated last year
- Repository for the SCS Spring School on Digital Chemistry☆21Apr 24, 2023Updated 2 years ago