KleistLab / WarpDemuX
direct RNA nanopore sequencing barcode design and demultiplexing
☆9Updated last week
Alternatives and similar repositories for WarpDemuX:
Users that are interested in WarpDemuX are comparing it to the libraries listed below
- A segmentation toolkit for segment the Nanopore RNA signal.☆18Updated 5 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- A simple toolkit for manipulating nanopore signal data☆18Updated 2 months ago
- A method for measuring allele-specific TL and characterizing telomere variant repeat (TVR) sequences from long reads.☆12Updated last month
- ☆9Updated 3 years ago
- A tool to detect structural variant☆18Updated last year
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆13Updated 3 months ago
- ☆18Updated 2 weeks ago
- crab go snap snap☆34Updated last month
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 4 years ago
- De novo construction of isoforms from long-read data☆25Updated 3 weeks ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- A genome browser in your Jupyter notebook☆30Updated this week
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆15Updated 3 weeks ago
- A streaming method for mapping nanopore raw signals☆31Updated 3 years ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆23Updated last month
- Determining tandem repeat lengths using raw nanopore signals.☆12Updated last year
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- ☆15Updated 5 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆14Updated 7 months ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆16Updated this week
- MarginPolish: Graph based assembly polishing☆45Updated 4 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆17Updated last year
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 2 months ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated 2 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆21Updated 3 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Nanopore direct RNA basecaller☆11Updated 2 years ago