ablab / IsoQuantLinks
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
☆176Updated last week
Alternatives and similar repositories for IsoQuant
Users that are interested in IsoQuant are comparing it to the libraries listed below
Sorting:
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆219Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆216Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆236Updated 3 weeks ago
- ☆102Updated 3 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆156Updated 2 years ago
- Full-Length Alternative Isoform analysis of RNA☆233Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆134Updated this week
- Technology agnostic long read analysis pipeline for transcriptomes☆149Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆256Updated last month
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆116Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆239Updated last month
- ☆132Updated last week
- A structural variation pipeline for short-read sequencing☆192Updated this week
- Fast alignment and preprocessing of chromatin profiles☆203Updated 3 weeks ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆273Updated 6 months ago
- Tools for plotting methylation data in various ways☆160Updated 2 weeks ago
- Detection of m6A from direct RNA-Seq data☆130Updated 3 months ago
- A minimap2 frontend for PacBio native data formats☆202Updated 6 months ago
- Jasmine: SV Merging Across Samples☆223Updated 8 months ago
- Tool for plotting sequencing data along genomic coordinates.☆308Updated last month
- Analysis of Chromosome Conformation Capture data (Hi-C)☆100Updated last month
- SUPPA: Fast quantification of splicing and differential splicing☆279Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆207Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated last month
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆258Updated 6 months ago
- Annotation and Ranking of Structural Variation☆263Updated last week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆166Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆153Updated last year
- A tool for somatic structural variant calling using long reads☆144Updated 2 weeks ago