ablab / IsoQuantLinks
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
☆195Updated last week
Alternatives and similar repositories for IsoQuant
Users that are interested in IsoQuant are comparing it to the libraries listed below
Sorting:
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆246Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 4 months ago
- Full-Length Alternative Isoform analysis of RNA☆244Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆164Updated 2 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 4 months ago
- Fast alignment and preprocessing of chromatin profiles☆207Updated 2 months ago
- ☆107Updated last week
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆251Updated 4 months ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆258Updated 4 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆154Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- ☆142Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆284Updated 10 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆215Updated 2 weeks ago
- A structural variation pipeline for short-read sequencing☆196Updated this week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- Tools for plotting methylation data in various ways☆165Updated last week
- SUPPA: Fast quantification of splicing and differential splicing☆287Updated last month
- Tool for plotting sequencing data along genomic coordinates.☆321Updated 5 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆173Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆155Updated last year
- Detection of m6A from direct RNA-Seq data☆129Updated 6 months ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆102Updated 2 weeks ago
- A bioinformatics tool for working with modified bases☆232Updated this week
- Annotation and Ranking of Structural Variation☆271Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆283Updated last month
- Fast and accurate gene fusion detection from RNA-Seq data☆253Updated 2 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆270Updated 3 weeks ago