DepledgeLab / DRUMMER
DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
☆21Updated 2 years ago
Alternatives and similar repositories for DRUMMER
Users that are interested in DRUMMER are comparing it to the libraries listed below
Sorting:
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 2 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- ☆23Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- Error correction of ONT transcript reads☆58Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 9 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Set of tools to manipulate and visualize modified base bam files☆55Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆29Updated 4 years ago
- Structural variant caller☆54Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- ☆35Updated 2 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated 2 weeks ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- ☆79Updated 2 months ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 3 years ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Human reference genome analysis sets☆52Updated last year
- ☆46Updated 8 months ago
- Master of Pores 2☆23Updated 5 months ago