DepledgeLab / DRUMMERLinks
DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
☆21Updated 3 years ago
Alternatives and similar repositories for DRUMMER
Users that are interested in DRUMMER are comparing it to the libraries listed below
Sorting:
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Long-read splice alignment with high accuracy☆63Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 6 months ago
- ☆36Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- ☆44Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆66Updated last week
- Error correction of ONT transcript reads☆58Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 8 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- ☆51Updated 6 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Structural variant merging tool☆54Updated last year
- Human reference genome analysis sets☆55Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 3 weeks ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- ☆23Updated 5 months ago
- ☆33Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆25Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- Indel caller for DNA-seq or RNA-seq☆15Updated 2 years ago
- ☆49Updated 10 months ago
- Structural variant caller☆55Updated 3 years ago
- ☆45Updated 8 years ago