DepledgeLab / DRUMMERLinks
DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
☆20Updated 3 years ago
Alternatives and similar repositories for DRUMMER
Users that are interested in DRUMMER are comparing it to the libraries listed below
Sorting:
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- Long-read splice alignment with high accuracy☆64Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆51Updated 9 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- ☆38Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 3 months ago
- ☆83Updated 9 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 8 months ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated this week
- ☆30Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Human reference genome analysis sets☆56Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 3 weeks ago
- processing 10x genomics reads☆26Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 3 months ago
- Structural variant caller☆55Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago