DepledgeLab / DRUMMERLinks
DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
☆21Updated 3 years ago
Alternatives and similar repositories for DRUMMER
Users that are interested in DRUMMER are comparing it to the libraries listed below
Sorting:
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Long-read splice alignment with high accuracy☆63Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- ☆30Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- ☆38Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- An insertion caller for Illumina paired-end WGS data.☆23Updated last month
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆49Updated 11 months ago
- ☆81Updated 7 months ago
- ☆23Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆24Updated last month
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Structural variant caller☆55Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago