Alternatives and similar repositories for TandemMod:

Users that are interested in TandemMod are comparing it to the libraries listed below

• sihaohuanguc / NanoSPA
  ☆14Updated last year
• gaoyubang / nanom6A
  ☆23Updated 2 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 8 months ago
• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 2 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 11 months ago
• haotianteng / Xron
  Xron - an omni basecaller for ONT reads.
  ☆21Updated 4 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated this week
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆17Updated last year
• Xinglab / espresso
  ☆60Updated 7 months ago
• novoalab / nanoRMS
  Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…
  ☆23Updated 2 years ago
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆17Updated last year
• WGLab / DeepMod2
  DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
  ☆45Updated 3 weeks ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆62Updated 8 months ago
• zhengdafangyuan / HiPore-C
  We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…
  ☆19Updated last year
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 5 months ago
• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆15Updated last month
• zhangtaolab / Chorus2
  A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).
  ☆23Updated 3 weeks ago
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆62Updated 3 weeks ago
• y9c / pseudoU-BIDseq
  🧪 Pipeline for detecting pseudouridine modification (BID-seq)
  ☆16Updated 10 months ago
• fiberseq / FIRE
  A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
  ☆19Updated last week
• BioinfoUNIBA / REDItools2
  ☆55Updated 3 years ago
• bartongroup / Simpson_Barton_Nanopore_1
  jupyter notebooks for Parker et al. eLife 2019
  ☆8Updated 5 years ago
• LabShengLi / nanome
  NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)
  ☆30Updated last year
• songbowang125 / SVision-pro
  ☆37Updated 2 months ago
• liucongcas / GLORI-tools
  bioinformatic pipeline for GLORI
  ☆20Updated 10 months ago
• zhqingit / giremi
  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
  ☆43Updated 7 years ago
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆47Updated 2 years ago