☆19Mar 31, 2025Updated last year
Alternatives and similar repositories for TandemMod
Users that are interested in TandemMod are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Mar 11, 2025Updated last year
- ☆13Oct 5, 2023Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- ☆14Jun 10, 2025Updated last year
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 11 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Detection of m6A from direct RNA-Seq data☆134May 19, 2025Updated last year
- [G]enomic [P]ositioning with [Py]thon☆15Jun 19, 2026Updated 3 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆46Jun 7, 2026Updated 3 months ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Aug 21, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆84Jan 6, 2025Updated last year
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Code for "Improving Stain Invariance of CNNs for Segmentation by Fusing Channel Attention and Domain-Adversarial Training"☆10Dec 5, 2023Updated 2 years ago
- bioinfo workflow based on snakemake☆15Feb 22, 2024Updated 2 years ago
- Methylation/modified base calling separated from basecalling.☆188Sep 17, 2024Updated 2 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated last year
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆13Nov 18, 2024Updated last year
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Aug 26, 2026Updated 3 weeks ago
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆16Oct 23, 2024Updated last year
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Automated Quantitative Trait Locus Analysis (AutoQTL)☆13Jul 22, 2026Updated last month
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 4 years ago
- ☆31Jul 28, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Aug 24, 2026Updated 3 weeks ago
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated last year
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆62Jul 21, 2026Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆50Aug 26, 2026Updated 3 weeks ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Mar 2, 2026Updated 6 months ago
- a tool for simulating nanopore raw signal data☆81Mar 4, 2026Updated 6 months ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆33Oct 23, 2021Updated 4 years ago