yulab2021 / TandemModLinks
☆16Updated 2 months ago
Alternatives and similar repositories for TandemMod
Users that are interested in TandemMod are comparing it to the libraries listed below
Sorting:
- ☆14Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- ☆23Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆22Updated 7 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆50Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- We developed a protocol of in situ high throughput multi-way contact long read Pore-C sequencing (in situ HiPore-C), a strategy that inte…☆19Updated last year
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆20Updated last week
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆30Updated this week
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆40Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 4 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- ☆41Updated 4 months ago
- tutorial on pggb☆34Updated 5 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 2 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last week
- ☆61Updated 10 months ago
- ☆48Updated 10 months ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 7 months ago