Alternatives and similar repositories for xpore:

Users that are interested in xpore are comparing it to the libraries listed below

• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆160Updated last year
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆114Updated last month
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated last week
• epi2me-labs / wf-transcriptomes
  ☆91Updated last week
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 10 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆127Updated 3 months ago
• GoekeLab / m6anet
  Detection of m6A from direct RNA-Seq data
  ☆119Updated 3 weeks ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆206Updated last week
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆210Updated 4 months ago
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆162Updated last week
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆149Updated 2 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆210Updated 2 weeks ago
• wdecoster / chopper
  ☆185Updated last month
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆184Updated 11 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆128Updated 2 weeks ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆134Updated 3 weeks ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆215Updated 9 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆166Updated 2 weeks ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆219Updated this week
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆147Updated this week
• mortazavilab / TALON
  Technology agnostic long read analysis pipeline for transcriptomes
  ☆143Updated last year
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆108Updated last month
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆179Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆144Updated 2 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated 5 months ago
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆88Updated 2 months ago