Alternatives and similar repositories for pod5Viewer

Users that are interested in pod5Viewer are comparing it to the libraries listed below

• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated 5 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆76Updated last week
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆32Updated last month
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆7Updated 3 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆73Updated 3 weeks ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• bonsai-team / Porechop_ABI
  Adapter trimmer for Oxford Nanopore reads using ab initio method
  ☆40Updated 5 months ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆40Updated 3 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆57Updated last week
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago
• Psy-Fer / buttery-eel
  The buttery eel - a slow5 guppy/dorado basecaller wrapper
  ☆39Updated last month
• dayzerodx / counterr
  ☆31Updated last year
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆79Updated 3 weeks ago
• kjenike / panagram
  ☆61Updated last month
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆36Updated last month
• mourisl / centrifuger
  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
  ☆58Updated last week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated 2 weeks ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 6 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆33Updated last week
• wdecoster / nanolyse
  Remove lambda phage reads from a fastq file
  ☆29Updated 2 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆94Updated 2 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated 2 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆43Updated 2 months ago
• Psy-Fer / interARTIC
  InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
  ☆31Updated last year
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆42Updated last month