dietvin / pod5ViewerLinks
GUI for inspecting POD5 files
☆30Updated 6 months ago
Alternatives and similar repositories for pod5Viewer
Users that are interested in pod5Viewer are comparing it to the libraries listed below
Sorting:
- ☆63Updated last week
- A local-haplotagging-based small and structural variant caller☆78Updated 2 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 5 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A repository for collecting GPU basecalling stats☆52Updated 2 weeks ago
- A program for assessing the T2T genome continuity☆81Updated 2 weeks ago
- Call select base modifications in PacBio HiFi reads☆8Updated 5 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- ☆30Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆117Updated this week
- Tiberius is a deep learning gene finder.☆67Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated last month
- Simple pileup-based variant caller☆91Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆107Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆102Updated last week
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆77Updated last week
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆60Updated 2 weeks ago
- A list of software for pangenomics☆119Updated this week
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆43Updated this week
- ☆71Updated 6 months ago
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated 2 weeks ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last week
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆31Updated 3 months ago