GUI for inspecting POD5 files
☆35Dec 19, 2024Updated last year
Alternatives and similar repositories for pod5Viewer
Users that are interested in pod5Viewer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated 2 years ago
- ☆14Aug 24, 2026Updated 3 weeks ago
- ☆84Jan 6, 2025Updated last year
- A nextflow pipeline for calling modifications in nanopore reads.☆17Updated this week
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆22Nov 24, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methylation/modified base calling separated from basecalling.☆189Sep 17, 2024Updated 2 years ago
- ☆15Aug 27, 2026Updated 3 weeks ago
- ☆19Nov 7, 2025Updated 10 months ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated last year
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆46Sep 12, 2026Updated last week
- A bioinformatics tool for working with modified bases☆275Jul 14, 2026Updated 2 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆46Jun 7, 2026Updated 3 months ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆20Jul 26, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- direct RNA nanopore sequencing barcode design and demultiplexing☆21Aug 3, 2026Updated last month
- ☆23Aug 13, 2026Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 10 months ago
- Super-fast and accurate demultiplexing of direct RNA-seq runs (Pryszcz*, Diensthuber*, et al., Genome Res 2025)☆20Aug 21, 2026Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated last year
- Detection of m6A from direct RNA-Seq data☆134May 19, 2025Updated last year
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆31Nov 28, 2024Updated last year
- Immuological gene typing and annotation for genome assembly☆42Mar 13, 2025Updated last year
- Scripts for analyses in the Griffin manuscript☆13Dec 14, 2022Updated 3 years ago
- Realtime base modification frequency tool☆15Sep 16, 2025Updated last year
- ☆52Jun 25, 2024Updated 2 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- ☆30Aug 2, 2026Updated last month
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Single cell Nanopore sequencing data for Genotype and Phenotype☆61May 15, 2025Updated last year
- Oxford Nanopore's Basecaller☆875Sep 3, 2026Updated 2 weeks ago
- WDL workflows for variant calling and assembly using ONT☆40Aug 28, 2026Updated 3 weeks ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- GPU CRF-CTC decoding for nanopore basecalling☆16Sep 2, 2026Updated 3 weeks ago
- ☆20Nov 17, 2025Updated 10 months ago
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year