An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
☆15May 17, 2025Updated last year
Alternatives and similar repositories for NanoTrans
Users that are interested in NanoTrans are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Apr 25, 2023Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- ☆10Mar 11, 2025Updated last year
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Mar 13, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Nanopore direct RNA basecaller☆11Oct 27, 2022Updated 3 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆27Oct 2, 2025Updated 9 months ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- Determining tandem repeat lengths using raw nanopore signals.☆15Sep 11, 2023Updated 2 years ago
- GPU CRF-CTC decoding for nanopore basecalling☆16Updated this week
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Detection of m6A from direct RNA-Seq data☆133May 19, 2025Updated last year
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- ☆13May 15, 2026Updated 2 months ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Fast and scalable nanopore adaptive sampling☆36Jun 6, 2023Updated 3 years ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 5 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated 11 months ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- ☆11Sep 17, 2020Updated 5 years ago
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- Realtime base modification frequency tool☆13Sep 16, 2025Updated 10 months ago
- ☆25Dec 24, 2022Updated 3 years ago
- WDL workflows for variant calling and assembly using ONT☆40Updated this week
- ☆20Nov 17, 2025Updated 8 months ago
- ☆12May 6, 2022Updated 4 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- ☆10Dec 20, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single cell Nanopore sequencing data for Genotype and Phenotype☆59May 15, 2025Updated last year
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Jan 24, 2022Updated 4 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Jan 19, 2018Updated 8 years ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆116May 1, 2026Updated 2 months ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated last year
- direct RNA nanopore sequencing barcode design and demultiplexing☆21Apr 26, 2026Updated 3 months ago