yjx1217 / NanoTrans
An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
☆14Updated 6 months ago
Alternatives and similar repositories for NanoTrans:
Users that are interested in NanoTrans are comparing it to the libraries listed below
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- This is the Haplotypo repository☆20Updated 10 months ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆14Updated last month
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 3 months ago
- Determining tandem repeat lengths using raw nanopore signals.☆14Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆16Updated 2 months ago
- A scaffold assembling pipeline for stLFR reads.☆15Updated 4 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14Updated 10 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆13Updated 3 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆15Updated 7 years ago
- End-guided RNA assembler☆15Updated 4 months ago
- Gene copy number prediction from k-mer frequencies☆12Updated 8 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 6 months ago
- ☆18Updated 4 months ago
- Phasing reads with secondary alignments☆17Updated 4 months ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 3 years ago
- ☆13Updated 9 months ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated 4 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- ☆10Updated this week
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 2 years ago
- Analyse RNA feature distributions.☆15Updated 3 months ago
- A long-read analysis toolbox for cancer and population genomics☆22Updated last month
- ☆10Updated 2 weeks ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆14Updated 11 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last week