yjx1217 / NanoTransLinks
An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
☆14Updated 2 months ago
Alternatives and similar repositories for NanoTrans
Users that are interested in NanoTrans are comparing it to the libraries listed below
Sorting:
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 7 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- This is the Haplotypo repository☆20Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- ☆15Updated 7 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 11 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 3 weeks ago
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆19Updated 2 months ago
- Gene copy number prediction from k-mer frequencies☆13Updated last year
- k-mer similarity analysis pipeline☆22Updated last month
- ☆26Updated 4 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Updated last month
- ☆16Updated last month
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- TQSLE v1.0 released☆10Updated last year
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆19Updated 4 years ago
- ☆16Updated 6 months ago
- A pipeline creation tool using Snakemake☆11Updated this week
- Analyse RNA feature distributions.☆16Updated 7 months ago
- End-guided RNA assembler☆15Updated 3 weeks ago
- ☆19Updated 8 months ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11Updated 7 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 3 years ago