weir12 / DeepEditLinks
DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
☆17Updated 2 years ago
Alternatives and similar repositories for DeepEdit
Users that are interested in DeepEdit are comparing it to the libraries listed below
Sorting:
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- ☆14Updated 2 years ago
- ☆23Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆22Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 2 months ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆33Updated last month
- ☆79Updated 10 months ago
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆34Updated last month
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆63Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆124Updated 2 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆55Updated 8 months ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆114Updated 7 months ago
- Predictive kmer models for development use☆62Updated 2 years ago
- ☆107Updated last month
- Variant calling tool for long-read sequencing data☆117Updated 8 months ago
- Collection of tools for the analysis of CpG data☆98Updated 4 months ago
- Research release basecalling models and configurations☆117Updated 6 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- a tool for inferring species tree from sequencing reads☆155Updated last month
- ☆16Updated 8 months ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 4 months ago
- ClairS - a deep-learning method for long-read somatic small variant calling☆100Updated last week
- Detecting methylation using signal-level features from Nanopore sequencing reads☆117Updated 2 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- ☆63Updated 2 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated last year