mem3nto0 / ModiDeC-RNA-modification-classifierLinks
☆12Updated 4 months ago
Alternatives and similar repositories for ModiDeC-RNA-modification-classifier
Users that are interested in ModiDeC-RNA-modification-classifier are comparing it to the libraries listed below
Sorting:
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 2 months ago
- ☆79Updated 10 months ago
- Read Until client library for Nanopore Sequencing☆106Updated last year
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆33Updated 3 weeks ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Updated last year
- ☆14Updated 2 years ago
- Visualise and analyse nanopore (ONT) raw signals☆123Updated 2 months ago
- Xron - an omni basecaller for ONT reads.☆22Updated 11 months ago
- Variant calling tool for long-read sequencing data☆112Updated 7 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆12Updated 2 months ago
- Long read aligner☆115Updated 2 years ago
- Research release basecalling models and configurations☆115Updated 5 months ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆73Updated 2 years ago
- Aligns short reads using dynamic seed size with strobemers☆181Updated this week
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- ☆46Updated 3 weeks ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆162Updated this week
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆158Updated 2 weeks ago
- Signal based nanopore RNA demultiplexing with convolutional neural networks☆38Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆52Updated 11 months ago
- ☆23Updated 2 years ago
- ☆10Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆131Updated last week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆84Updated 6 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year