Psy-Fer / deeplexiconLinks
Signal based nanopore RNA demultiplexing with convolutional neural networks
☆39Updated last year
Alternatives and similar repositories for deeplexicon
Users that are interested in deeplexicon are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- ☆49Updated last year
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆36Updated last year
- Master of Pores 2☆23Updated last year
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 4 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last month
- Error correction for Illumina RNA-seq reads☆67Updated 2 weeks ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Merging paired-end reads and removing adapters☆46Updated 2 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 5 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆24Updated 3 years ago
- PHAST☆78Updated last week
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆24Updated 3 years ago
- NANOME pipeline (Nanopore long-read sequencing consensus DNA methylation detection method and pipeline)☆34Updated last month
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago