novoalab / nanoRMSLinks
Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)
☆23Updated 2 years ago
Alternatives and similar repositories for nanoRMS
Users that are interested in nanoRMS are comparing it to the libraries listed below
Sorting:
- ☆36Updated 2 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated last year
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆62Updated 10 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 4 months ago
- ☆23Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated last month
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 4 years ago
- ☆23Updated 7 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 3 months ago
- ☆34Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated last month
- Long read to rMATS☆32Updated 2 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated this week
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 5 months ago
- A program for the analysis of single cell nanopore long read data☆19Updated last month
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Updated 3 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆47Updated 4 months ago
- ☆19Updated 2 years ago