novoalab / nanoRMSLinks
Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)
☆24Updated 2 years ago
Alternatives and similar repositories for nanoRMS
Users that are interested in nanoRMS are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 years ago
- ☆23Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 7 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated 2 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆42Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated last month
- ☆20Updated 3 years ago
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated last month
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 4 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- ☆23Updated 10 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- ☆34Updated 10 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆20Updated 3 years ago
- ☆37Updated 6 years ago
- ☆13Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆36Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆45Updated 4 months ago