☆13Oct 5, 2023Updated 3 years ago
Alternatives and similar repositories for NanoSPA
Users that are interested in NanoSPA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Mar 31, 2025Updated last year
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆47Jun 7, 2026Updated 5 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆11Jan 6, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated last year
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆23Oct 12, 2022Updated 4 years ago
- Master of Pores 2☆23Dec 4, 2024Updated last year
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆14Sep 29, 2021Updated 5 years ago
- [G]enomic [P]ositioning with [Py]thon☆15Jun 19, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jun 10, 2025Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Jul 21, 2026Updated 3 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated last year
- Analyse RNA feature distributions.☆21Dec 16, 2024Updated last year
- Detection of m6A from direct RNA-Seq data☆133May 19, 2025Updated last year
- Scripts for identifying sites with differential error rates in mapped nanopore DRS data☆11Nov 27, 2020Updated 5 years ago
- SPIDER-WEB generates coding algorithms with superior error tolerance and real-time information retrieval capacity☆11Jun 21, 2024Updated 2 years ago
- Package for including repetitive regions in peak calling from ChIP-seq datasets☆11Nov 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆14Oct 25, 2026Updated last week
- An analysis pipeline for Nanopore direct-RNA sequencing☆15Jul 24, 2025Updated last year
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 5 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 7 months ago
- ☆25Dec 24, 2022Updated 3 years ago
- PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measureme…☆21Aug 6, 2024Updated 2 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆15Apr 29, 2024Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆167Sep 14, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆40Nov 8, 2023Updated 2 years ago
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆12Sep 26, 2024Updated 2 years ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆13Aug 27, 2025Updated last year
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆16Sep 26, 2026Updated last month
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆16Aug 18, 2026Updated 2 months ago