Alternatives and similar repositories for lapa:

Users that are interested in lapa are comparing it to the libraries listed below

• LappalainenLab / lorals
  ☆33Updated last year
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆57Updated 3 months ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated last month
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆20Updated last year
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆53Updated last month
• rvolden / Mandalorion-Episode-II
  Version II of Mandalorion
  ☆32Updated 5 years ago
• ENCODE-DCC / wgbs-pipeline
  ENCODE whole-genome bisulfite sequencing (WGBS) pipeline
  ☆29Updated 2 years ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated last year
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 9 months ago
• Xinglab / rMATS-long
  ☆25Updated last month
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆58Updated 10 months ago
• gagneurlab / absplice
  ☆33Updated 4 months ago
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last week
• mortazavilab / cerberus
  ☆16Updated 5 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 3 months ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆37Updated 2 years ago
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆21Updated last year
• guigolab / sQTLseekeR2
  R package to detect splicing QTLs (sQTLs)
  ☆12Updated last year
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆42Updated 3 months ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆22Updated 9 months ago
• LosicLab / starchip
  Detection of Circular RNA and Fusions from RNA-Seq
  ☆32Updated 6 years ago
• kundajelab / idr
  IDR
  ☆31Updated last year
• christopher-vollmers / Mandalorion
  Pipeline to identify isoforms from full-length cDNA sequencing data
  ☆24Updated 8 months ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆32Updated 9 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆27Updated last year
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆36Updated 3 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 4 months ago