mortazavilab / lapaLinks
Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
☆31Updated last year
Alternatives and similar repositories for lapa
Users that are interested in lapa are comparing it to the libraries listed below
Sorting:
- ☆36Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- ☆32Updated 9 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- ☆23Updated 8 months ago
- Long read to rMATS☆32Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- ☆19Updated 2 years ago
- R package to detect splicing QTLs (sQTLs)☆13Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- ☆37Updated 6 years ago
- ☆23Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated 2 months ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- ☆13Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆66Updated this week
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated 2 months ago
- Improving gene isoform quantification with miniQuant☆27Updated last month
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆13Updated 2 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated last week
- Reconstruction of focal amplifications with long reads☆22Updated last month