mfurla / NanOlympicsModLinks
This repository contains the code developed for the NanOlympicsMod project.
☆12Updated 2 years ago
Alternatives and similar repositories for NanOlympicsMod
Users that are interested in NanOlympicsMod are comparing it to the libraries listed below
Sorting:
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 5 months ago
- Copy number caller for long read data including SNV utilization☆68Updated 10 months ago
- ☆52Updated 4 months ago
- Somatic structural variant caller for long-read data☆87Updated 2 months ago
- Set of tools to manipulate and visualize modified base bam files☆59Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Updated last week
- The Flexible Demultiplexer☆39Updated last month
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 5 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- ☆32Updated 4 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆66Updated this week
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆71Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆118Updated 4 months ago
- ☆64Updated 4 months ago
- ☆18Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 10 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- ☆83Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Variant annotation and merging pipeline☆42Updated 6 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- Code for phasing SVs with SNPs☆54Updated 5 years ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Updated 11 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆60Updated last year