mfurla / NanOlympicsMod
This repository contains the code developed for the NanOlympicsMod project.
☆10Updated 7 months ago
Related projects: ⓘ
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆14Updated 3 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆32Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆39Updated last month
- ☆13Updated 3 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated last year
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Updated 2 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆29Updated 6 months ago
- ☆18Updated last year
- ☆45Updated 3 weeks ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆16Updated last year
- ENCODE long read RNA-seq pipeline☆44Updated last year
- Set of tools to manipulate and visualize modified base bam files☆47Updated 2 years ago
- Somatic structural variant caller for long-read data☆43Updated 3 weeks ago
- Error correction of ONT transcript reads☆57Updated last year
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆53Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆12Updated 5 months ago
- Methylation Phasing for Nanopore Sequencing☆44Updated last year
- ☆29Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆93Updated 3 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆44Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Extract modifed base call information from Guppy Fast5 files.☆13Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆45Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆20Updated 2 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 3 years ago
- ☆22Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆28Updated 6 months ago