mfurla / NanOlympicsModLinks
This repository contains the code developed for the NanOlympicsMod project.
☆12Updated 2 years ago
Alternatives and similar repositories for NanOlympicsMod
Users that are interested in NanOlympicsMod are comparing it to the libraries listed below
Sorting:
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 5 months ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆52Updated 4 months ago
- Copy number caller for long read data including SNV utilization☆68Updated 10 months ago
- ☆44Updated last year
- ☆18Updated 2 years ago
- ☆32Updated 4 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Reconstruction of focal amplifications with long reads☆23Updated 2 months ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- Code for phasing SVs with SNPs☆53Updated 5 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆24Updated last week
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆72Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ☆84Updated 10 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- Fast and accurate coordinate conversion between assemblies☆118Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆78Updated 2 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- The Flexible Demultiplexer☆39Updated 3 weeks ago
- ☆24Updated 3 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10Updated 5 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Data from the Human PanGenomics Project☆61Updated 4 years ago
- Somatic structural variant caller for long-read data☆87Updated 2 months ago