mfurla / NanOlympicsModLinks
This repository contains the code developed for the NanOlympicsMod project.
☆12Updated last year
Alternatives and similar repositories for NanOlympicsMod
Users that are interested in NanOlympicsMod are comparing it to the libraries listed below
Sorting:
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Copy number caller for long read data including SNV utilization☆68Updated 9 months ago
- ☆17Updated 2 years ago
- ☆52Updated 3 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆23Updated 3 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆52Updated 3 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆65Updated this week
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆34Updated 5 months ago
- ☆83Updated 10 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- Somatic structural variant caller for long-read data☆87Updated last month
- ☆44Updated last year
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 6 months ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 3 years ago
- ☆31Updated 3 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- The Flexible Demultiplexer☆38Updated 4 months ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 3 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- WDL workflows for variant calling and assembly using ONT☆38Updated this week
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Updated 4 years ago
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆11Updated 5 years ago