Alternatives and similar repositories for NanOlympicsMod:

Users that are interested in NanOlympicsMod are comparing it to the libraries listed below

• novoalab / m6ABasecaller
  An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…
  ☆15Updated last month
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 8 months ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated this week
• darelab2014 / Dinopore
  DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing
  ☆17Updated last year
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆52Updated 2 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 4 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 11 months ago
• weir12 / DENA
  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
  ☆22Updated 2 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆22Updated 2 years ago
• Psy-Fer / blue-crab
  crab go snap snap
  ☆37Updated last month
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• epi2me-labs / modbam2bed
  ☆47Updated 7 months ago
• novoalab / modPhred
  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
  ☆16Updated 11 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆47Updated 2 years ago
• gaoyubang / nanom6A
  ☆23Updated 2 years ago
• DepledgeLab / DRUMMER
  DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets
  ☆21Updated 2 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆32Updated 2 months ago
• mpertea / stringtie2-initial-release
  Transcript assembly and quantification for RNA-Seq
  ☆8Updated 5 years ago
• benedictpaten / marginAlign
  UCSC Nanopore
  ☆43Updated 5 years ago
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆36Updated 9 months ago
• sihaohuanguc / NanoSPA
  ☆14Updated last year
• mchowdh200 / samplot-ml
  ☆22Updated 3 years ago
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• weng-lab / TEMP2
  Algorithm to detect germline and de novo transposon insertions
  ☆27Updated 11 months ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 5 months ago
• physnano / rRNA_nanoSHAPE
  Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
  ☆13Updated 3 years ago
• Maggi-Chen / FusionSeeker
  A gene fusion caller for long-read transcriptome sequencing data.
  ☆18Updated 11 months ago