physnano / rRNA_nanoSHAPELinks
Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
☆13Updated 3 years ago
Alternatives and similar repositories for rRNA_nanoSHAPE
Users that are interested in rRNA_nanoSHAPE are comparing it to the libraries listed below
Sorting:
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆14Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 3 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆39Updated 10 months ago
- ☆23Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆59Updated 3 weeks ago
- RNA modification detection using Nanopore raw reads with Deep One Class classification☆19Updated 4 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- processing 10x genomics reads☆26Updated 5 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆19Updated last month
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆12Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆18Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- ☆29Updated 4 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- ☆36Updated 2 years ago
- Xron - an omni basecaller for ONT reads.☆22Updated 6 months ago
- ☆21Updated 3 years ago