chhylp123 / BitMapperBS

Related projects ⓘ

Alternatives and complementary repositories for BitMapperBS

• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 5 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated last week
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆39Updated 2 months ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆21Updated 7 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 2 years ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆40Updated last year
• lh3 / lianti
  Tools to process LIANTI sequence data
  ☆23Updated 5 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆12Updated 2 weeks ago
• hanyue36 / nanoplexer
  Tool for demultiplexing Nanopore barcode sequence data
  ☆18Updated 3 years ago
• billzt / readfq
  A simple tool to calculate reads number and total base count in FASTQ file
  ☆20Updated 5 years ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆26Updated 7 years ago
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆17Updated 2 months ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆27Updated 4 months ago
• sfu-compbio / sinvict
  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
  ☆27Updated 4 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆24Updated 9 years ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆12Updated last week
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 5 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 2 weeks ago
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆21Updated 3 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆17Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆32Updated 4 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆31Updated 7 years ago
• liangfan01 / pipeline-for-isoseq
  ☆14Updated 6 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 7 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆48Updated 3 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆45Updated 5 years ago