Alternatives and similar repositories for BitMapperBS

Users that are interested in BitMapperBS are comparing it to the libraries listed below

• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• lh3 / lianti
  Tools to process LIANTI sequence data
  ☆23Updated 6 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 4 months ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated this week
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆40Updated this week
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 6 months ago
• cancerit / telomerecat
  Telomerecat: The telomere computational analysis tool
  ☆21Updated 3 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 4 months ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• sdchandra / CNAclinic
  ☆24Updated 11 months ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• ccgd-profile / BreaKmer
  A method to identify structural variation from sequencing data in target regions
  ☆32Updated 4 years ago
• jameslz / fastx-utils
  fastx-utils using klib
  ☆18Updated 4 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 9 years ago
• heinc1010 / BAMixChecker
  BAMixChecker: A fast and efficient tool for sample matching checkup
  ☆14Updated 3 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• gosianow / DRIMSeq
  Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…
  ☆11Updated 4 years ago
• bioinf-jku / panelcn.mops
  CNV detection tool for targeted NGS panel data
  ☆16Updated 3 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆29Updated last year
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆18Updated 11 months ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 7 months ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆24Updated last month
• jengelmann / FastqPuri
  fastq quality assessment and filtering tool
  ☆18Updated 2 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆33Updated last year
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 4 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆34Updated 7 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago