a-slide / NanoCountLinks
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
☆63Updated 11 months ago
Alternatives and similar repositories for NanoCount
Users that are interested in NanoCount are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 4 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆69Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆63Updated 2 weeks ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆47Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated this week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- The Flexible Demultiplexer☆35Updated last month
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated this week
- Updated and optimized fork of BSMAP☆23Updated 4 years ago
- Somatic structural variant caller for long-read data☆80Updated 2 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- ☆38Updated 2 years ago
- BigWig and BAM utilities☆97Updated last year
- Human reference genome analysis sets☆55Updated 2 years ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated this week
- python plotly Circos from VCF☆39Updated last year
- Allele-specific alignment sorting☆59Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆48Updated 2 years ago