a-slide / NanoCountLinks
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
☆64Updated last year
Alternatives and similar repositories for NanoCount
Users that are interested in NanoCount are comparing it to the libraries listed below
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- ENCODE long read RNA-seq pipeline☆52Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated last month
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆23Updated 2 months ago
- The Flexible Demultiplexer☆37Updated 3 months ago
- ☆64Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Human reference genome analysis sets☆56Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- Somatic structural variant caller for long-read data☆87Updated last month
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆28Updated last month
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated 3 weeks ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- Long-read splice alignment with high accuracy☆64Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 2 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆15Updated 3 weeks ago
- ☆38Updated 2 years ago
- ☆23Updated 3 years ago
- long read RNA-seq quantification☆97Updated last month
- BigWig and BAM utilities☆99Updated last year
- python plotly Circos from VCF☆40Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 months ago