a-slide / NanoCount
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
☆57Updated 3 months ago
Alternatives and similar repositories for NanoCount:
Users that are interested in NanoCount are comparing it to the libraries listed below
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Long-read Isoform Quantification and Analysis☆39Updated 3 weeks ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 9 months ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- ☆48Updated 5 months ago
- The Flexible Demultiplexer☆27Updated 3 weeks ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆56Updated last month
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- ☆25Updated 2 weeks ago
- ☆20Updated 2 years ago
- Somatic structural variant caller for long-read data☆55Updated this week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆32Updated this week
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆58Updated 10 months ago
- Methylation Phasing for Nanopore Sequencing☆46Updated last year
- Drosophila transposable element canonical sequences☆28Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- ☆33Updated last year
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 8 months ago
- ☆58Updated 5 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆46Updated 4 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆42Updated 3 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated 11 months ago
- processing 10x genomics reads☆24Updated 5 years ago