EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
☆67Oct 11, 2024Updated last year
Alternatives and similar repositories for NanoCount
Users that are interested in NanoCount are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Oct 14, 2024Updated last year
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆15Apr 4, 2024Updated 2 years ago
- Technology agnostic long read analysis pipeline for transcriptomes☆159Jan 25, 2024Updated 2 years ago
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆22May 20, 2026Updated 3 weeks ago
- Full-Length Alternative Isoform analysis of RNA☆252May 19, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- ☆31Nov 28, 2024Updated last year
- Detection of m6A from direct RNA-Seq data☆131May 19, 2025Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆244May 20, 2026Updated 3 weeks ago
- ☆24Jul 30, 2025Updated 10 months ago
- FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.…☆12May 8, 2025Updated last year
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆45Jul 19, 2024Updated last year
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆112May 1, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 6 years ago
- Research release basecalling models and configurations☆117May 20, 2026Updated 3 weeks ago
- ☆21Apr 20, 2026Updated last month
- SingleCell Nanopore sequencing data analysis☆68May 30, 2025Updated last year
- RNA modifications detection from Nanopore dRNA-Seq data☆88May 19, 2026Updated 3 weeks ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆161Jan 23, 2026Updated 4 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆79Mar 21, 2023Updated 3 years ago
- ☆65Mar 19, 2026Updated 2 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆228Jun 4, 2026Updated last week
- De novo construction of isoforms from long-read data☆36Jun 10, 2025Updated last year
- Long-read Isoform Quantification and Analysis☆40Mar 25, 2025Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago
- Full-length transcriptome splicing and mutation analysis☆92Mar 23, 2026Updated 2 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 9 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 3 years ago
- A curated list of awesome nanopore analysis tools.☆313May 20, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Jan 28, 2026Updated 4 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- long read RNA-seq quantification☆112Updated this week
- ☆39Apr 25, 2023Updated 3 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 3 years ago