combiz / scFlowLinks
Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
☆57Updated last year
Alternatives and similar repositories for scFlow
Users that are interested in scFlow are comparing it to the libraries listed below
Sorting:
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- ☆55Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- ☆43Updated 4 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆29Updated 2 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated last month
- Explore and download data from the recount3 project☆36Updated last month
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- ☆39Updated 4 years ago
- Normalize CITEseq Data☆66Updated this week
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Identify and correct invalid gene symbols☆60Updated 11 months ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- ☆44Updated last year
- ☆37Updated 8 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated 2 weeks ago