A portable and fast single cell type identifier
☆64May 12, 2021Updated 5 years ago
Alternatives and similar repositories for scibet
Users that are interested in scibet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assessing the purity of single cell population☆155Jun 3, 2022Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆99Nov 30, 2023Updated 2 years ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- SCDC☆50Jun 20, 2025Updated last year
- ☆15Sep 21, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Scissor package☆272May 10, 2024Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆45Mar 30, 2024Updated 2 years ago
- ☆18Jun 13, 2019Updated 7 years ago
- Single-Cell Clustering Assessment Framework☆111Oct 27, 2023Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆673Jun 1, 2026Updated 2 months ago
- scLearn:Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆667Jun 5, 2026Updated 2 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆244May 8, 2023Updated 3 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆214Jan 9, 2023Updated 3 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆222Aug 30, 2023Updated 2 years ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆103Jul 19, 2021Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 10 months ago
- ☆43Jun 11, 2022Updated 4 years ago
- ☆134Mar 27, 2022Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Multi-subject Single Cell Deconvolution☆306Mar 4, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆139Mar 22, 2023Updated 3 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 3 weeks ago
- Quantifying metabolism activity at the single-cell resolution☆192Feb 18, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R package containing the Cerebro application.☆40Nov 21, 2021Updated 4 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- scID☆14Oct 21, 2021Updated 4 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 6 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆86Jun 17, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆260Jul 7, 2026Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 5 years ago