PaulingLiu / scibet
A portable and fast single cell type identifier
☆64Updated 3 years ago
Alternatives and similar repositories for scibet:
Users that are interested in scibet are comparing it to the libraries listed below
- ☆59Updated 5 years ago
- ☆32Updated 5 years ago
- scWGCNA☆58Updated 2 years ago
- simpler single cell RNAseq data clustering☆40Updated last month
- ☆48Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- SCDC☆45Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Functions for single cell data analysis☆31Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆22Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 3 years ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Updated 4 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters an…☆41Updated 2 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- ☆30Updated 2 years ago
- ☆45Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Single cell RNA analysis about paper “Caloric restriction reprograms the single-cell transcriptional landscape of Rattus norvegicus aging…☆28Updated 5 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago