A portable and fast single cell type identifier
☆63May 12, 2021Updated 5 years ago
Alternatives and similar repositories for scibet
Users that are interested in scibet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- Feature Selection in scRNA-seq☆11Sep 9, 2021Updated 5 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆100Nov 30, 2023Updated 2 years ago
- SCDC☆52Jun 20, 2025Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- ☆18Jun 13, 2019Updated 7 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆247May 8, 2023Updated 3 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 3 months ago
- ☆15Sep 21, 2021Updated 5 years ago
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated 3 months ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆27Jun 5, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NicheNet: predict active ligand-target links between interacting cells☆685Updated this week
- Single-Cell Clustering Assessment Framework☆111Oct 27, 2023Updated 3 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- Scissor package☆279May 10, 2024Updated 2 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆674Oct 15, 2026Updated 3 weeks ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- ☆136Aug 23, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- scLearn:Learning for single cell assignment☆35Dec 13, 2024Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆216Jan 9, 2023Updated 3 years ago
- scID☆14Oct 21, 2021Updated 5 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆35Dec 29, 2020Updated 5 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆46Oct 10, 2025Updated last year
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆223Aug 30, 2023Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆104Jul 19, 2021Updated 5 years ago
- Multi-subject Single Cell Deconvolution☆318Mar 4, 2024Updated 2 years ago
- a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell …☆139Mar 22, 2023Updated 3 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- ☆43Jun 11, 2022Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 3 years ago